PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_14386_iso_5
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C3H
Protein Properties Length: 307aa    MW: 32088.5 Da    PI: 10.0111
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_14386_iso_5genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.76.3e-064871225
                                          -S---SGGGGTS--TTTTT-SS-S CS
                               zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
                                          k ++C  f+ t  C++G++C+F H
  cra_locus_14386_iso_5_len_1163_ver_3 48 KSKPCTKFFSTAGCQFGESCHFLH 71
                                          7789******************** PP
2zf-CCCH28.82.2e-09112137227
                                           -S---SGGGGTS--TTTTT-SS-SSS CS
                               zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                                           kt++C++f     Ck+Gd+C+FaHg+
  cra_locus_14386_iso_5_len_1163_ver_3 112 KTKICSRFNTAEGCKFGDKCHFAHGE 137
                                           89**********************96 PP
3zf-CCCH37.34.6e-12274298126
                                           --S---SGGGGTS--TTTTT-SS-SS CS
                               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                                           ykt+lC +fa+ G C +G+rC+FaHg
  cra_locus_14386_iso_5_len_1163_ver_3 274 YKTKLCENFAK-GSCTFGERCHFAHG 298
                                           9**********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.84673IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.1084674IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-54772IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.8E-74871IPR000571Zinc finger, CCCH-type
PfamPF146080.455471No hitNo description
Gene3DG3DSA:4.10.1000.105.3E-13108140IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.63E-8109140IPR000571Zinc finger, CCCH-type
SMARTSM003566.9E-4110137IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.742110138IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-6112137IPR000571Zinc finger, CCCH-type
SuperFamilySSF547915.7E-15173249IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.102.8E-16177248IPR004088K Homology domain, type 1
SMARTSM003223.0E-12178248IPR004087K Homology domain
PROSITE profilePS5008414.278179243IPR004088K Homology domain, type 1
PfamPF000131.7E-11181245IPR004088K Homology domain, type 1
CDDcd001056.02E-14181243No hitNo description
Gene3DG3DSA:4.10.1000.101.2E-16268304IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.59E-9271303IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.746273300IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-7273299IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-9274298IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
VVTASRSKVL RAMDTRKRSR MDATVSANGG FKKSKPDMDS LSSGIGSKSK PCTKFFSTAG  60
CQFGESCHFL HYVPGGYNAV AQMMNLTPAP ASRNAVATPS IPNGASGSPA VKTKICSRFN  120
TAEGCKFGDK CHFAHGEWEI GKPIIPWHED PRAMGPGPGR FGGRMEPAVP GPAAGFGASA  180
TTKISVDASL AGGIIGKSGV NSKQICRQTG AKLAIRDHES DPNLRNIELE GTFEQIQQAS  240
AMVRELIASL GSSVVGLGRA SGGPGGPPPQ MSNYKTKLCE NFAKGSCTFG ERCHFAHGAA  300
ELRKSGV
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00113ampDAPTransfer from AT3G12130Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019245694.11e-172PREDICTED: zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R01e-107C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A1J6IEQ91e-171A0A1J6IEQ9_NICAT; Zinc finger ccch domain-containing protein 14
STRINGXP_009780696.11e-171(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8452498