PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_14522_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

SRS

Protein Properties

Length: 243aa MW: 27180.6 Da PI: 9.3417

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_14522_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	122.5	5.1e-38	135	220	4	90
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkr 76 ++sCqdCGnqakkdCah+RCRtCCksrg++C thvkstWvpaakrrerqqqla+++++++++++++++++++ cra_locus_14522_iso_2_len_1609_ver_3 135 SGISCQDCGNQAKKDCAHMRCRTCCKSRGYNCPTHVKSTWVPAAKRRERQQQLASLQQQQQHQQNQQQQQQHQ 207 5689****************************************************99998887777666666 PP DUF702 77 elkskkqsalsstk 90 + ++++ ++tk cra_locus_14522_iso_2_len_1609_ver_3 208 LQLHHHHH-RENTK 220 55333333.33332 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	4.9E-35	136	227	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	6.5E-28	138	180	IPR006510	Zinc finger, lateral root primordium type 1

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010051	Biological Process	xylem and phloem pattern formation
GO:0010252	Biological Process	auxin homeostasis
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0048479	Biological Process	style development
GO:0048480	Biological Process	stigma development
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MAGFFSLGGG GGGAGGGTQS GRATTSNNQE EESQNPNIGI SPENWFLYRN NQDEDNIPYN 60 KGFELWQYHQ QQQQQRHNHP AAVVQDLYPL DIGGGSSSSH HHGRLNLTSD EPNPRSGAAG 120 GFVMMRSSGS GGGGSGISCQ DCGNQAKKDC AHMRCRTCCK SRGYNCPTHV KSTWVPAAKR 180 RERQQQLASL QQQQQHQQNQ QQQQQHQLQL HHHHHRENTK RHRENPSSGN FRLKPSKEFF 240 RNF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371, PubMed:24142382). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371, PubMed:24142382). Acts synergistically with MYC1 in the transactivation of TPS5 (PubMed:24884371). {ECO:0000269\|PubMed:24142382, ECO:0000269\|PubMed:24884371}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00613	PBM	Transfer from AT3G51060	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016560706.1	1e-56	PREDICTED: protein SHI RELATED SEQUENCE 1-like
Swissprot	K4B6C9	2e-41	EOT1_SOLLC; Protein EXPRESSION OF TERPENOIDS 1
TrEMBL	A0A0V0IDY8	4e-57	A0A0V0IDY8_SOLCH; Uncharacterized protein
STRING	XP_009763993.1	4e-55	(Nicotiana sylvestris)

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Spyropoulou EA,Haring MA,Schuurink RC RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters. BMC Genomics, 2014. 15: p. 402 [PMID:24884371]