PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_14634_iso_2
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family bHLH
Protein Properties Length: 226aa    MW: 26031.5 Da    PI: 5.644
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_14634_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.43e-145698754
                                         HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                                  HLH  7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                                           Er+RR+++N++++ Lr+++Pk +      K++Ka+i + A+eYI++L
  cra_locus_14634_iso_2_len_751_ver_3 56 VSERNRRKKLNDRLFALRSVVPKiS------KMDKASIIKDAIEYIQEL 98
                                         57*********************66......****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.01E-1848115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.2594998IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.35E-1352103No hitNo description
Gene3DG3DSA:4.10.280.109.0E-1855116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.5E-1555104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.9E-125698IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MESLDIHEEY KHYWETNMIF QTEELESYFD DQTLSAYYDS SSPDGGQSST ASKNIVSERN  60
RRKKLNDRLF ALRSVVPKIS KMDKASIIKD AIEYIQELHE QERILQAEIS ELELKKNAFM  120
EFDQETISYA NSKPKRTRIH HHDHYSINGG SRSSPIEILE LRVSYMREKT IVVSLTCSKR  180
TDTMVKLCEV FESLDLKVIT ANITAFSGSL ITTVFLEVSL SLSLSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A7e-13551151068Transcription factor MYC2
5gnj_B7e-13551151068Transcription factor MYC2
5gnj_E7e-13551151068Transcription factor MYC2
5gnj_F7e-13551151068Transcription factor MYC2
5gnj_G7e-13551151068Transcription factor MYC2
5gnj_I7e-13551151068Transcription factor MYC2
5gnj_M7e-13551151068Transcription factor MYC2
5gnj_N7e-13551151068Transcription factor MYC2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008223870.11e-102PREDICTED: transcription factor bHLH35
SwissprotQ2HIV91e-72BH035_ARATH; Transcription factor bHLH35
TrEMBLM5XG551e-101M5XG55_PRUPE; Uncharacterized protein
STRINGEMJ251121e-102(Prunus persica)