PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_14696_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family ERF
Protein Properties Length: 234aa    MW: 25759.2 Da    PI: 4.4078
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_14696_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.92.2e-172978255
                                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                         +ykGVr +k +g++v+eIr p++   r r++lg+++tae+Aa+a +aa  +l+g
  cra_locus_14696_iso_1_len_977_ver_3 29 KYKGVRKRK-WGKFVSEIRLPNS---RERIWLGSYDTAEKAARAFDAALFCLRG 78
                                         8*****999.**********933...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.8E-292987IPR001471AP2/ERF domain
PfamPF008472.7E-102978IPR001471AP2/ERF domain
SuperFamilySSF541715.82E-202987IPR016177DNA-binding domain
PROSITE profilePS5103221.4962986IPR001471AP2/ERF domain
SMARTSM003802.2E-322992IPR001471AP2/ERF domain
CDDcd000181.27E-282988No hitNo description
PRINTSPR003672.7E-93041IPR001471AP2/ERF domain
PRINTSPR003672.7E-95268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MVKKSVVREE SFSSSSSSSE RINGFHSDKY KGVRKRKWGK FVSEIRLPNS RERIWLGSYD  60
TAEKAARAFD AALFCLRGKS AKFNFPDNPP EIVNGRSMTP AEIQVAAARY ANSDATRDTS  120
GSGRVDNLDS SYSSVSSFSE PELRVDSPCP SVSDGGAVQV ENEISEIPLD TAFLDNFSIM  180
GTGENSNVAD FGIFPGFDDF FGAPLPCSNI DFYDGEENYN EGFSSSQDSF LWNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-172486972Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13036KGVRKRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00151DAPTransfer from AT1G19210Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027065228.19e-86ethylene-responsive transcription factor ERF017-like
TrEMBLA0A068U3G45e-84A0A068U3G4_COFCA; Uncharacterized protein
STRINGXP_009624342.19e-70(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19392466