PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_14743_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

Trihelix

Protein Properties

Length: 429aa MW: 49771.2 Da PI: 5.3594

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_14743_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	94.7	8.7e-30	277	362	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrts 73 rW+k ev aLi++r++ e+++++ lk+ lWee+s+ m++ gf+rs+k+Ckekwen+nk++kk ke+ +k++ cra_locus_14743_iso_2_len_1453_ver_3 277 RWPKAEVEALIQIRSRFETNFQEPGLKGLLWEEISNEMAKMGFQRSAKRCKEKWENINKYFKKSKENPIKERR 349 8********************************************************************** PP trihelix 74 essstcpyfdqle 86 ++ +tc yfdql+ cra_locus_14743_iso_2_len_1453_ver_3 350 QKLKTCEYFDQLD 362 **********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.2E-5	267	333	IPR009057	Homeodomain-like
PROSITE profile	PS50090	7.48	270	334	IPR017877	Myb-like domain
SuperFamily	SSF46689	1.79E-5	272	341	IPR009057	Homeodomain-like
SMART	SM00717	0.0015	274	336	IPR001005	SANT/Myb domain
CDD	cd12203	1.41E-24	276	341	No hit	No description
Pfam	PF13837	1.5E-21	276	364	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 429 aa Download sequence Send to blast
MKCCRKQFCP DISEAKNIER GIIEAKDKDQ EEQPEMNQNQ NHHEDYNHDF DEETVQNSCL 60 EAGKSRLFGE LEAICGHASS SSCIGKSNHH HKSAAGSLII NGGETLAEGT CLAPPALDQS 120 NHLNNASSDQ TLDEVEEDEP FSRMVKKKRK KREKMKDDEI SSMAQLFERL VKQLMDHQEI 180 LYKKFVDMIE RIDKERKDRE EAWRKQESEV ASKAHERTLL ASSSTKESSS NVFEYLERIT 240 GKSMNLISPP IRDHEPPLEL SNNRSRNNVD QNVMSKRWPK AEVEALIQIR SRFETNFQEP 300 GLKGLLWEEI SNEMAKMGFQ RSAKRCKEKW ENINKYFKKS KENPIKERRQ KLKTCEYFDQ 360 LDQLYSKAQE KGYYNIKEVD FEGSSNYGKF QVKKNHDDNN HEEADHEDLV GQTEEGEEED 420 NKGESGHEE

Sequence ? help Back to Top

Protein Sequence Length: 429 aa Download sequence Send to blast

MKCCRKQFCP DISEAKNIER GIIEAKDKDQ EEQPEMNQNQ NHHEDYNHDF DEETVQNSCL  60
EAGKSRLFGE LEAICGHASS SSCIGKSNHH HKSAAGSLII NGGETLAEGT CLAPPALDQS  120
NHLNNASSDQ TLDEVEEDEP FSRMVKKKRK KREKMKDDEI SSMAQLFERL VKQLMDHQEI  180
LYKKFVDMIE RIDKERKDRE EAWRKQESEV ASKAHERTLL ASSSTKESSS NVFEYLERIT  240
GKSMNLISPP IRDHEPPLEL SNNRSRNNVD QNVMSKRWPK AEVEALIQIR SRFETNFQEP  300
GLKGLLWEEI SNEMAKMGFQ RSAKRCKEKW ENINKYFKKS KENPIKERRQ KLKTCEYFDQ  360
LDQLYSKAQE KGYYNIKEVD FEGSSNYGKF QVKKNHDDNN HEEADHEDLV GQTEEGEEED  420
NKGESGHEE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	145	151	KKKRKKR
2	146	150	KKRKK
3	148	153	RKKREK

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00651	PBM	Transfer from LOC_Os02g01380	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027084142.1	2e-85	trihelix transcription factor GT-2-like