PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_14834_iso_3
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family NF-YB
Protein Properties Length: 160aa    MW: 18205 Da    PI: 5.3513
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_14834_iso_3genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB32.61.9e-1036122788
                                NF-YB   7 flPianvsrimkkvlPa...na..kiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlG 75 
                                          +lP + v r++k  l +   ++   + +++ +   e +  fi ++++ a+d c++ kr+ in++d++ al ++ 
  cra_locus_14834_iso_3_len_477_ver_3  36 ELPKTIVRRLVKDKLSQlssDSemSVLRESLQAFSESARIFIHYLSATANDICRESKRQIINAEDVFKALEEIE 109
                                          68888899999987654111331145578889999*************************************** PP

                                NF-YB  76 fedyveplkvylk 88 
                                          f ++++pl++ l+
  cra_locus_14834_iso_3_len_477_ver_3 110 FPEFAAPLRASLE 122
                                          ********98775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.3E-2333122IPR009072Histone-fold
PfamPF008082.3E-836105IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471136.29E-1837122IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
XNFHAKMLEK EKKKAEENGE TAEAPATAVA VVEREELPKT IVRRLVKDKL SQLSSDSEMS  60
VLRESLQAFS ESARIFIHYL SATANDICRE SKRQIINAED VFKALEEIEF PEFAAPLRAS  120
LEGLCFFYNT HSLRCHVXCL ENVNFVNSPS EAFSKIFLYX
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016547484.14e-49PREDICTED: DNA polymerase epsilon subunit 3
TrEMBLA0A2G2VPY17e-49A0A2G2VPY1_CAPBA; Uncharacterized protein
STRINGSolyc11g068480.1.17e-47(Solanum lycopersicum)