PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_14834_iso_4

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

NF-YB

Protein Properties

Length: 172aa MW: 19429.4 Da PI: 4.7171

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_14834_iso_4	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	41	4.6e-13	36	131	7	97
NF-YB 7 flPianvsrimkkvlPa...na..kiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlG 75 +lP + v r++k l + ++ + +++ + e + fi ++++ a+d c++ kr+ in++d++ al ++ cra_locus_14834_iso_4_len_735_ver_3 36 ELPKTIVRRLVKDKLSQlssDSemSVLRESLQAFSESARIFIHYLSATANDICRESKRQIINAEDVFKALEEIE 109 68888899999987654111331145578889999************************************* PP NF-YB 76 fedyveplkvylkkyrelegek 97 f ++++pl++ l++yr+ ++ek cra_locus_14834_iso_4_len_735_ver_3 110 FPEFAAPLRASLEEYRQKNAEK 131 **************998886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.1E-29	33	166	IPR009072	Histone-fold
Pfam	PF00808	2.6E-8	36	105	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamily	SSF47113	2.48E-22	37	150	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 172 aa Download sequence Send to blast
XNFHAKMLEK EKKKAEENGE TAEAPATAVA VVEREELPKT IVRRLVKDKL SQLSSDSEMS 60 VLRESLQAFS ESARIFIHYL SATANDICRE SKRQIINAED VFKALEEIEF PEFAAPLRAS 120 LEEYRQKNAE KKSGLAKESN NRKGKRKEPP VAEKADKEDG NEDEEVEDSA DD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5y26_A	5e-14	37	143	18	121	DNA polymerase epsilon subunit D
5y27_A	5e-14	37	143	18	121	DNA polymerase epsilon subunit D
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027181522.1	2e-68	DNA polymerase epsilon subunit 3
TrEMBL	A0A3G1TVN9	3e-66	A0A3G1TVN9_COFCA; DNA polymerase epsilon subunit 3
STRING	Migut.D02442.1.p	3e-59	(Erythranthe guttata)