PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_14847_iso_3
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family bHLH
Protein Properties Length: 109aa    MW: 12517.9 Da    PI: 4.9442
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_14847_iso_3genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.41.1e-0785109125
                                          CHHHHHHHHHHHHHHHHHHHHHHHC CS
                                  HLH   1 rrrahnerErrRRdriNsafeeLre 25 
                                          ++ +hn+ Er RR+riN+ ++ Lr+
  cra_locus_14847_iso_3_len_634_ver_3  85 KKLNHNASERDRRKRINDLYSSLRS 109
                                          6789*******************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.0E-675109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-584109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.04284109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-585109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.04E-585109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010106Biological Processcellular response to iron ion starvation
GO:0055072Biological Processiron ion homeostasis
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 109 aa     Download sequence    Send to blast
MHVFLCTEIM LAVSPSMFGR PNLDQDMMIR NGEIMSFFAE TEETSSDSFL RHSPTSFPKL  60
GVREDDDDDD FNRSSPANGE EKAVKKLNHN ASERDRRKRI NDLYSSLRS