PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_14847_iso_4

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

bHLH

Protein Properties

Length: 182aa MW: 20967.8 Da PI: 6.2831

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_14847_iso_4	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.6	7.1e-06	2	37	18	55
HHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 18 safeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 + ++ Lr+llP+ + + kKls ++ ++ +YI +Lq cra_locus_14847_iso_4_len_627_ver_3 2 DLYSSLRSLLPQsD---QTKKLSIPGTVARVLKYIPELQ 37 57899*****55...8888*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	8.613	1	36	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	8.9E-7	2	56	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.0E-4	4	57	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010106	Biological Process	cellular response to iron ion starvation
GO:0055072	Biological Process	iron ion homeostasis
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 182 aa Download sequence Send to blast
XDLYSSLRSL LPQSDQTKKL SIPGTVARVL KYIPELQKEL ESLQEKKEIL LRKMAKQENS 60 ISGFEKHRKE NNYVVRSLSV VSATRLSDKE IMIQISTTKS KRGSFAQLLW CLEQNGLFFL 120 DLSCFESFQE RVFYNLHLQV EGSEGIMDLE DLKEKISNSI CEKQEEPTHL NFGSNLLVEA 180 LF

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022855242.1	9e-51	transcription factor ORG2-like
TrEMBL	A0A2G9HLC3	7e-43	A0A2G9HLC3_9LAMI; Uncharacterized protein
STRING	XP_009625856.1	2e-42	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2226	22	56