PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_14860_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

bHLH

Protein Properties

Length: 257aa MW: 28753.1 Da PI: 9.4744

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_14860_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.7	3.6e-12	182	226	6	54
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +++Er RR ri +++ +L+el+P+ +k + a++L +Av+YIk+L cra_locus_14860_iso_2_len_1211_ver_3 182 SIAERVRRTRISERMKKLQELVPNM----DKQTNTADMLDLAVHYIKDL 226 689*******************7....688*************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.875	176	226	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.7E-15	179	240	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.52E-11	180	229	No hit	No description
Gene3D	G3DSA:4.10.280.10	4.7E-14	181	235	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.2E-9	182	226	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.6E-12	182	232	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
AGYAGSAFPN GASTGTSAVL SPSSNRFSSG NGIPSNLGMM LSRISESENE NPIPGRTNNI 60 NIPDPEPDHQ KLSNASNNRE SQLYCPPLPF SSRNNNNNSS KYSHNFTGFK TEIENDHQGL 120 FSDNHQGGEP RRNRSPMLSH HLSLPKISGE IVAMEKLLQF RDTTTVPCKI RAKRGCATHP 180 RSIAERVRRT RISERMKKLQ ELVPNMDKQT NTADMLDLAV HYIKDLRKQY KTLSEFRANC 240 RCSDTHKSVS VVDHEEF

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027070406.1	4e-82	transcription factor bHLH130-like
Swissprot	Q66GR3	1e-54	BH130_ARATH; Transcription factor bHLH130
TrEMBL	A0A068UR53	1e-79	A0A068UR53_COFCA; Uncharacterized protein
STRING	Solyc10g079050.1.1	2e-70	(Solanum lycopersicum)

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]