PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_14945_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family NF-YA
Protein Properties Length: 112aa    MW: 12417.7 Da    PI: 10.8362
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_14945_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA40.11.2e-122243658
                            CBFB_NFYA 36 kpylheSRhkhAlrRpRgsgGrF 58
                                         +pylheSRh hA++R Rg+gGrF
  cra_locus_14945_iso_1_len_719_ver_3  2 QPYLHESRHLHAVNRVRGTGGRF 24
                                         79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5115218127IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.6E-9224IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 112 aa     Download sequence    Send to blast
MQPYLHESRH LHAVNRVRGT GGRFLSKKEQ QQSVDPTPSR GSASSSVHSH RAEVQKSKTK  60
ERNDGPSNGN LFFQQPADHN KISSVTDQMA LSMLGSGGFT GNEHRYRAPS FQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019191956.12e-18PREDICTED: nuclear transcription factor Y subunit A-7-like isoform X1
RefseqXP_019191957.12e-18PREDICTED: nuclear transcription factor Y subunit A-7-like isoform X1
RefseqXP_019191958.12e-18PREDICTED: nuclear transcription factor Y subunit A-7-like isoform X1
RefseqXP_019191959.12e-18PREDICTED: nuclear transcription factor Y subunit A-4-like isoform X2
TrEMBLA0A1S3ZCP81e-15A0A1S3ZCP8_TOBAC; nuclear transcription factor Y subunit A-6-like
STRINGPOPTR_0018s07220.12e-14(Populus trichocarpa)