PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_14964_iso_2
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family LBD
Protein Properties Length: 210aa    MW: 22608.6 Da    PI: 6.4965
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_14964_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26097.61.3e-302104198
                               DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAeara 69 
                                          +C++C+vlrr+C+++C+l+p++     p++q +++ +v k+FG+s ++ +++a+p+++++++++sl+yeA+ r+
  cra_locus_14964_iso_2_len_951_ver_3   2 SCNGCRVLRRGCSEKCALRPCLewidtPQAQGNATLFVSKFFGRSDLMAFITAVPDTKKPALFQSLLYEACGRT 75 
                                          6************************************************************************* PP

                               DUF260  70 rdPvyGavgvilklqqqleqlkaelallk 98 
                                           +Pv+Gavg++++++++l+++++e++l++
  cra_locus_14964_iso_2_len_951_ver_3  76 VNPVNGAVGLLSTGNWHLCHAAVETVLAG 104
                                          **********************9998775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.9661107IPR004883Lateral organ boundaries, LOB
PfamPF031953.5E-262101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MSCNGCRVLR RGCSEKCALR PCLEWIDTPQ AQGNATLFVS KFFGRSDLMA FITAVPDTKK  60
PALFQSLLYE ACGRTVNPVN GAVGLLSTGN WHLCHAAVET VLAGGTLRPV FGVGVASIDT  120
DESSESFRTD SPRVQHKYAK SKPSLILYGS NNEMVMDHQS DYNSSDLYLS PISFGSSEEL  180
SEVSGSWGNG GYDGIKGVGG KEPKLLNLFV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027149787.16e-91LOB domain-containing protein 38-like
SwissprotQ9SZE87e-65LBD39_ARATH; LOB domain-containing protein 39
TrEMBLA0A068TYW93e-88A0A068TYW9_COFCA; Uncharacterized protein
STRINGEOY157522e-71(Theobroma cacao)