PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_15002_iso_4
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family GATA
Protein Properties Length: 52aa    MW: 5434 Da    PI: 4.7929
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_15002_iso_4genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA28.71.8e-093552118
                                 GATA  1 CsnCgttkTplWRrgpdg 18
                                         C+ CgttkTplWR gp g
  cra_locus_15002_iso_4_len_529_ver_3 35 CADCGTTKTPLWRGGPAG 52
                                         ****************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577162.76E-52852No hitNo description
Gene3DG3DSA:3.30.50.101.5E-73452IPR013088Zinc finger, NHR/GATA-type
PfamPF003207.2E-73552IPR000679Zinc finger, GATA-type
PROSITE profilePS501149.8953552IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 52 aa     Download sequence    Send to blast
MVDLSDKVSE SEVMNNSPPT TPERASSDGT HIKTCADCGT TKTPLWRGGP AG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027115942.11e-20GATA transcription factor 16-like
TrEMBLA0A2R6PJL93e-16A0A2R6PJL9_ACTCH; GATA transcription factor
STRINGMigut.G00106.1.p2e-16(Erythranthe guttata)