PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_15010_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

Protein Properties

Length: 177aa MW: 20133.8 Da PI: 6.678

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_15010_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	52.5	8.8e-17	71	157	1	93
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangL 74 f+ ++ps+v+ +l l f+++h ++++ +tl de+g +W + +rk++ l++GWk+F+ +++L cra_locus_15010_iso_1_len_845_ver_3 71 FIRSMLPSHVTGGFWLGLQSAFCKRHL--PRRDDIVTLIDEQGDEWPTVYLFRKTG----LSGGWKKFAVDHEL 138 778899******************4..345668***********999999....********** PP -TT-EEEEEE-SSSEE..E CS B3 75 kegDfvvFkldgrsefelv 93 +gD +vF+l++ + f+ + cra_locus_15010_iso_1_len_845_ver_3 139 VDGDALVFHLIQPTVFKIY 157 ********997777443 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	8.9E-21	64	161	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	9.22E-24	65	162	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	9.24E-25	69	160	No hit	No description
Pfam	PF02362	9.4E-14	71	157	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	12.379	71	162	IPR003340	B3 DNA binding domain
SMART	SM01019	3.6E-22	71	162	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence Send to blast
MGYAXTNDFF KLMKYMLADG FRVLFMLILC RIVYPKRGLS NRVYASDEAR ESAIQKAEKL 60 ESTLEGDHPS FIRSMLPSHV TGGFWLGLQS AFCKRHLPRR DDIVTLIDEQ GDEWPTVYLF 120 RKTGLSGGWK KFAVDHELVD GDALVFHLIQ PTVFKIYITR VNSSAEENVT EASDVSS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027093434.1	1e-71	B3 domain-containing protein Os06g0194400-like
Refseq	XP_027149634.1	1e-71	B3 domain-containing protein Os06g0194400 isoform X1
Refseq	XP_027149635.1	1e-71	B3 domain-containing protein Os06g0194400 isoform X2
Swissprot	Q1G3M3	1e-51	Y3918_ARATH; B3 domain-containing protein At3g19184
TrEMBL	A0A068U161	3e-70	A0A068U161_COFCA; Uncharacterized protein
STRING	Migut.C00592.1.p	2e-66	(Erythranthe guttata)

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]