PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_15010_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

Protein Properties

Length: 235aa MW: 26943 Da PI: 10.2917

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_15010_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	51.6	1.7e-16	129	215	1	93
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkang 73 f+ ++ps+v+ +l l f+++h ++++ +tl de+g +W + +rk++ l++GWk+F+ +++ cra_locus_15010_iso_2_len_1115_ver_3 129 FIRSMLPSHVTGGFWLGLQSAFCKRHL--PRRDDIVTLIDEQGDEWPTVYLFRKTG----LSGGWKKFAVDHE 195 778899******************4..345668***********999999....********* PP --TT-EEEEEE-SSSEE..E CS B3 74 LkegDfvvFkldgrsefelv 93 L +gD +vF+l++ + f+ + cra_locus_15010_iso_2_len_1115_ver_3 196 LVDGDALVFHLIQPTVFKIY 215 *********997777443 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.8E-20	122	219	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.86E-23	123	220	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.30E-25	127	218	No hit	No description
Pfam	PF02362	1.8E-13	129	215	IPR003340	B3 DNA binding domain
SMART	SM01019	3.6E-22	129	220	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	12.379	129	220	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence Send to blast
MVMSKVKYEA IRQQRMEENK RKLEQLHLPL LSQALQKASS PKPSPMKNVK PRIIRTELVP 60 VRRSGRFANK PAPHYKEVIF NERVHLPRRI VYPKRGLSNR VYASDEARES AIQKAEKLES 120 TLEGDHPSFI RSMLPSHVTG GFWLGLQSAF CKRHLPRRDD IVTLIDEQGD EWPTVYLFRK 180 TGLSGGWKKF AVDHELVDGD ALVFHLIQPT VFKIYITRVN SSAEENVTEA SDVSS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027093434.1	1e-128	B3 domain-containing protein Os06g0194400-like
Refseq	XP_027149635.1	1e-128	B3 domain-containing protein Os06g0194400 isoform X2
Swissprot	Q1G3M3	1e-67	Y3918_ARATH; B3 domain-containing protein At3g19184
TrEMBL	A0A068U161	1e-126	A0A068U161_COFCA; Uncharacterized protein
STRING	XP_009783454.1	1e-116	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1628	23	71

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]