PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_15030_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family ERF
Protein Properties Length: 211aa    MW: 23584.4 Da    PI: 5.5113
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_15030_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2621.4e-1975124355
                                   AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                           y+GVr+++ +g+++AeIrd + ng   r++lg+f++aeeAa a+++a+ +++g
  cra_locus_15030_iso_1_len_1003_ver_3  75 YRGVRRRP-WGKYAAEIRDSTRNG--IRVWLGTFDSAEEAALAYDQAAFSMRG 124
                                           9*******.**********44465..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.72E-3173133No hitNo description
PROSITE profilePS5103223.06474132IPR001471AP2/ERF domain
SuperFamilySSF541713.47E-2374134IPR016177DNA-binding domain
SMARTSM003801.6E-3774138IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-3074132IPR001471AP2/ERF domain
PRINTSPR003671.1E-107586IPR001471AP2/ERF domain
PfamPF008473.7E-1475124IPR001471AP2/ERF domain
PRINTSPR003671.1E-1098114IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MQPSFSWDDV LPFNFNDSED MFLLDVLSEV VRESSDTNSS SSAAAAAASA SSINKEEEVT  60
SNIKFKGGAK KEQNYRGVRR RPWGKYAAEI RDSTRNGIRV WLGTFDSAEE AALAYDQAAF  120
SMRGSMAVLN FPIEIVKESL REMKFKCGSE DGCSPVVELK KRHSSMKKKS GKNRKNRGRE  180
LLSENVVVFE DLGAEYLEEL LNSSEINMGN R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-30751351575Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019181066.15e-77PREDICTED: ethylene-responsive transcription factor 1B-like
SwissprotA0A3Q7I5Y94e-71ERFC3_SOLLC; Ethylene-response factor C3
TrEMBLA0A2R6PP942e-80A0A2R6PP94_ACTCH; Ethylene-responsive transcription factor 1B like
STRINGXP_010262305.16e-71(Nelumbo nucifera)
STRINGXP_010274787.11e-70(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Pirrello J, et al.
    Functional analysis and binding affinity of tomato ethylene response factors provide insight on the molecular bases of plant differential responses to ethylene.
    BMC Plant Biol., 2012. 12: p. 190
    [PMID:23057995]
  3. Du M, et al.
    MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato.
    Plant Cell, 2017. 29(8): p. 1883-1906
    [PMID:28733419]