PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_15030_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

ERF

Protein Properties

Length: 200aa MW: 22299.7 Da PI: 7.2663

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_15030_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	62.1	1.2e-19	64	113	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+++AeIrd + ng r++lg+f++aeeAa a+++a+ +++g cra_locus_15030_iso_2_len_800_ver_3 64 YRGVRRRP-WGKYAAEIRDSTRNG--IRVWLGTFDSAEEAALAYDQAAFSMRG 113 9*****.******44465..***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	8.19E-31	62	122	No hit	No description
PROSITE profile	PS51032	23.064	63	121	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	3.14E-23	63	123	IPR016177	DNA-binding domain
SMART	SM00380	1.6E-37	63	127	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.8E-30	63	121	IPR001471	AP2/ERF domain
Pfam	PF00847	3.3E-14	64	113	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.1E-10	64	75	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.1E-10	87	103	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence Send to blast
XFNFNDSEDM FLLDVLSEVV RESSDTNSSS SAAAAAASAS SINKEEEVTS NIKFKGGAKK 60 EQNYRGVRRR PWGKYAAEIR DSTRNGIRVW LGTFDSAEEA ALAYDQAAFS MRGSMAVLNF 120 PIEIVKESLR EMKFKCGSED GCSPVVELKK RHSSMKKKSG KNRKNRGREL LSENVVVFED 180 LGAEYLEELL NSSEINMGNR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	3e-30	64	124	15	75	Ethylene-responsive transcription factor ERF096
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269\|PubMed:23057995, ECO:0000269\|PubMed:28733419}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269\|PubMed:28733419}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019181066.1	2e-74	PREDICTED: ethylene-responsive transcription factor 1B-like
Swissprot	A0A3Q7I5Y9	2e-69	ERFC3_SOLLC; Ethylene-response factor C3
TrEMBL	A0A2R6PP94	1e-75	A0A2R6PP94_ACTCH; Ethylene-responsive transcription factor 1B like
STRING	VIT_07s0005g03230.t01	2e-68	(Vitis vinifera)

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Pirrello J, et al. Functional analysis and binding affinity of tomato ethylene response factors provide insight on the molecular bases of plant differential responses to ethylene. BMC Plant Biol., 2012. 12: p. 190 [PMID:23057995] Du M, et al. MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato. Plant Cell, 2017. 29(8): p. 1883-1906 [PMID:28733419]