PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_15140_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family ERF
Protein Properties Length: 160aa    MW: 18407.6 Da    PI: 10.7078
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_15140_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.84.7e-1761111255
                                  AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                                          +y+GVr++  +g+++AeIrdp   + k  r++lg++ t+e+Aa a+++ + k++g
  cra_locus_15140_iso_1_len_966_ver_3  61 RYRGVRRRL-WGKFAAEIRDP---NkKGSRIWLGTYETPEDAALAYEEPAFKMRG 111
                                          8*****877.**********9...4345***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.24E-2560121No hitNo description
PROSITE profilePS5103222.66961119IPR001471AP2/ERF domain
PfamPF008474.9E-1261111IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-2161120IPR016177DNA-binding domain
SMARTSM003803.5E-3461125IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-3061120IPR001471AP2/ERF domain
PRINTSPR003671.5E-96273IPR001471AP2/ERF domain
PRINTSPR003671.5E-985101IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MTKQLESLNR QQLGRNFVEI DSGAGTSRRK SKLRKLQQQY CCNSSTAAES SSEENSEEWK  60
RYRGVRRRLW GKFAAEIRDP NKKGSRIWLG TYETPEDAAL AYEEPAFKMR GSKAKLNFPH  120
LIGSNISEPV RVNPRKRYRK LTTTSSSSSS EEDTEGRKKR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-2860125469ATERF1
3gcc_A6e-2860125469ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00311DAPTransfer from AT2G44840Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009593489.12e-45PREDICTED: ethylene-responsive transcription factor 13-like
RefseqXP_016511096.12e-45PREDICTED: ethylene-responsive transcription factor 13-like
TrEMBLA0A192XLM41e-60A0A192XLM4_CATRO; ORCA3-like protein 1
STRINGXP_009593489.11e-44(Nicotiana tomentosiformis)