PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_15140_iso_2
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family ERF
Protein Properties Length: 205aa    MW: 22622.9 Da    PI: 4.8109
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_15140_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.27.5e-17106156255
                                   AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                                           +y+GVr++  +g+++AeIrdp   + k  r++lg++ t+e+Aa a+++ + k++g
  cra_locus_15140_iso_2_len_1000_ver_3 106 RYRGVRRRL-WGKFAAEIRDP---NkKGSRIWLGTYETPEDAALAYEEPAFKMRG 156
                                           8*****877.**********9...4345***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.82E-28105166No hitNo description
Gene3DG3DSA:3.30.730.103.1E-30106165IPR001471AP2/ERF domain
SMARTSM003803.5E-34106170IPR001471AP2/ERF domain
SuperFamilySSF541713.14E-21106165IPR016177DNA-binding domain
PfamPF008477.9E-12106156IPR001471AP2/ERF domain
PROSITE profilePS5103222.669106164IPR001471AP2/ERF domain
PRINTSPR003672.1E-9107118IPR001471AP2/ERF domain
PRINTSPR003672.1E-9130146IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MLDEITISAS DLALLSFIEE HLLSDSSEIL PNSDDDSSSN HLIDSSWEEI LLKSILEPEP  60
PAGSLSSESC SNSTATAAGS PSSESCCNSS TAAESSSEEN SEEWKRYRGV RRRLWGKFAA  120
EIRDPNKKGS RIWLGTYETP EDAALAYEEP AFKMRGSKAK LNFPHLIGSN ISEPVRVNPR  180
KRYRKLTTTS SSSSSEEDTE GRKKR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-27105170469ATERF1
3gcc_A1e-27105170469ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00311DAPTransfer from AT2G44840Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A192XLM41e-111A0A192XLM4_CATRO; ORCA3-like protein 1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165