PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_15191_iso_2
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family MIKC_MADS
Protein Properties Length: 187aa    MW: 21904.2 Da    PI: 9.3015
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_15191_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.41.8e-28959151
                                          S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                                SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                          k+i+n + rqvtfskRr g++KKAeELSvLCda+v +iifsstgkl+eyss
  cra_locus_15191_iso_2_len_1499_ver_3  9 KKIDNATARQVTFSKRRRGLFKKAEELSVLCDADVGLIIFSSTGKLFEYSS 59
                                          68***********************************************96 PP
2K-box454.5e-16931752098
                                 K-box  20 elakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKn....ellleqieelqkkekelq 88 
                                           +++ L ke+    +++R++ GedL+ L++++LqqLe+ Le++l+++ +kK     e ++++i++lq+k  +l 
  cra_locus_15191_iso_2_len_1499_ver_3  93 NYTILSKEVADKSHQLRQMRGEDLQGLTIEDLQQLERSLETGLSRVIEKKIcfqgEKIMKEINHLQQKGMQLM 165
                                           5666777777777999*********************************95444488**************** PP

                                 K-box  89 eenkaLrkkl 98 
                                           een++Lr+++
  cra_locus_15191_iso_2_len_1499_ver_3 166 EENEKLRQQV 175
                                           ********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.2E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.291161IPR002100Transcription factor, MADS-box
CDDcd002653.43E-40277No hitNo description
SuperFamilySSF554551.07E-31380IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-27323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.1E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-273859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129712.76987181IPR002487Transcription factor, K-box
PfamPF014861.5E-1592175IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009266Biological Processresponse to temperature stimulus
GO:0009910Biological Processnegative regulation of flower development
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0030154Biological Processcell differentiation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048438Biological Processfloral whorl development
GO:0005634Cellular Componentnucleus
GO:0000900Molecular Functiontranslation repressor activity, nucleic acid binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MAREKIQIKK IDNATARQVT FSKRRRGLFK KAEELSVLCD ADVGLIIFSS TGKLFEYSSS  60
SMKEILERHN LHSKNLAKME QPSLELQLVE NSNYTILSKE VADKSHQLRQ MRGEDLQGLT  120
IEDLQQLERS LETGLSRVIE KKICFQGEKI MKEINHLQQK GMQLMEENEK LRQQVVTKKN  180
CYYHYYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-20169169MEF2C
5f28_B2e-20169169MEF2C
5f28_C2e-20169169MEF2C
5f28_D2e-20169169MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00272DAPTransfer from AT2G22540Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027075278.11e-106MADS-box protein SVP-like
SwissprotQ9FUY61e-100JOIN_SOLLC; MADS-box protein JOINTLESS
TrEMBLA0A068U0511e-104A0A068U051_COFCA; Uncharacterized protein
STRINGXP_009364259.11e-100(Pyrus x bretschneideri)
Publications ? help Back to Top
  1. Nakano T,Kato H,Shima Y,Ito Y
    Apple SVP Family MADS-Box Proteins and the Tomato Pedicel Abscission Zone Regulator JOINTLESS have Similar Molecular Activities.
    Plant Cell Physiol., 2015. 56(6): p. 1097-106
    [PMID:25746985]