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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
cra_locus_15245_iso_1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 222aa MW: 24121.9 Da PI: 10.1614 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| cra_locus_15245_iso_1 | genome | MPGR | - |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 216.7 | 2e-66 | 43 | 222 | 124 | 301 |
GAGA_bind 124 velreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesad..erskaekksi 194
+e++ +++a pi++ a++++ +kkk ++++ k++k+k + k +++ +sk k+k+++++ + k +k+
cra_locus_15245_iso_1_len_1679_ver_3 43 TEMNSGPCIDAIPIRSVAPTSECAKKKVTSKSMKVKKKKPSAKFSHQNGSSKLKSKQPKKSpsHGGKVVRKNP 115
455666789999****99999999999999999999999988888777777777777766634558999**** PP
GAGA_bind 195 dlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkk 267
v n ++D s++P+PvCsCtG+ r CYk G+ GWqS+CCtttiS+yPLP+s+ ++gaR++grKm +g+++k
cra_locus_15245_iso_1_len_1679_ver_3 116 TEVYNAAKFDFSKVPPPVCSCTGVARGCYKCGTCGWQSSCCTTTISQYPLPMSPSKPGARLGGRKMTTGVYTK 188
9************************************************************************ PP
GAGA_bind 268 lLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
lL +La+eG dls pvDLk+hWAkHGtnkfvti+
cra_locus_15245_iso_1_len_1679_ver_3 189 LLCRLATEGADLSYPVDLKHHWAKHGTNKFVTIK 222
*********************************8 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 222 aa
Download sequence Send
to blast |
MTTNEHPVPS EFNHSGAPFP HFFGFPGIFY PAEEVSCCNF QATEMNSGPC IDAIPIRSVA 60
PTSECAKKKV TSKSMKVKKK KPSAKFSHQN GSSKLKSKQP KKSPSHGGKV VRKNPTEVYN 120
AAKFDFSKVP PPVCSCTGVA RGCYKCGTCG WQSSCCTTTI SQYPLPMSPS KPGARLGGRK 180
MTTGVYTKLL CRLATEGADL SYPVDLKHHW AKHGTNKFVT IK
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| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 66 | 80 | KKKVTSKSMKVKKKK |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
