PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_15329_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family bHLH
Protein Properties Length: 525aa    MW: 59252.2 Da    PI: 4.7121
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_15329_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.11e-10274341755
                                           HHHHHHHHHHHHHHHHHHCTSCCC......................TTS-STCHHHHHHHHHHHHHHH CS
                                   HLH   7 erErrRRdriNsafeeLrellPkas...................kapskKlsKaeiLekAveYIksLq 55 
                                            +Er+RR+++N+++  Lr l+P+++                     +   l+ a+iL  AveY+k+Lq
  cra_locus_15329_iso_1_len_1573_ver_3 274 VAERKRRKKLNDRLYALRALVPENFkgkcklmarilttifvsfnYLTFLELDRAAILGDAVEYVKDLQ 341
                                           68*********************999******************889999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142158.1E-8370IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088813.592267340IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.39E-10269345No hitNo description
SuperFamilySSF474595.1E-13270354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-11273346IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.7E-14274354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.3E-8274341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0048657Biological Processanther wall tapetum cell differentiation
GO:0005634Cellular Componentnucleus
GO:0000978Molecular FunctionRNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
PSSIPLDSGI YAEALMSNQI SWMNFSPNLD SNLSQETVGT RVLIPIPGGL VELFVAKQVP  60
EDQEIIEFIT AQCNISLEQQ GMIHSNATNS NFEVNFNGFH DAPSNNLATV EIDDHQNVIS  120
HDMFNSNLKD NNNVNLPHDV SIDQMPVCHS STRFSQHYNH NSDHAGSKND VIFYQGTNNH  180
QELNPFKTST DGGFQQDVEL MQNRVMNHHQ GNMFMHMMEP LEDKEDQGNN DNDSFKQDNI  240
RSNAAISDSD PNEEDEDAKY RRRPGKGPQS KNLVAERKRR KKLNDRLYAL RALVPENFKG  300
KCKLMARILT TIFVSFNYLT FLELDRAAIL GDAVEYVKDL QKQVKDLQDE LEENSDDEDQ  360
RNIETSKNQS IPNQQDIFQQ HKGIIAASNG GVGPPKQNNE SENNVEKVQQ MEPQVEVAQL  420
DGNEFFVRVF CEHKPGEFVR LLEALNSLNL EVGNVNATRH TCLVSNVFKV ERKDNEMIQA  480
EYVRSSLLEL TRNPSSTEWA GNGMAAKALE DGNRNDQQGG GGRRX
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1260281RRRPGKGPQSKNLVAERKRRKK
2275282ERKRRKKL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027169354.11e-172transcription factor ABORTED MICROSPORES
TrEMBLA0A068V8D31e-169A0A068V8D3_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA96722227