PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_15342_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

Protein Properties

Length: 252aa MW: 29487.1 Da PI: 6.3818

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_15342_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	56.2	6.1e-18	13	90	14	97
T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 + + +p +f+ + +g+ t tl+ +sg+sWevk+ kk + ++l++GW++F ++n+L +gD+++F+++++++ cra_locus_15342_iso_1_len_994_ver_3 13 SSVQIPTDFMHHLEGVAL--DTATLTISSGQSWEVKV--VKKENDIMLEDGWQKFRDDNDLSTGDVLLFTHSQNMS 84 5578****55588843..489999*******..9*****************************99999 PP E..EEEEE CS B3 90 felvvkvf 97 f +k++ cra_locus_15342_iso_1_len_994_ver_3 85 F--DIKIY 90 9..66665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	13.451	1	93	IPR003340	B3 DNA binding domain
CDD	cd10017	3.62E-13	2	91	No hit	No description
Gene3D	G3DSA:2.40.330.10	9.3E-18	2	93	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	1.4E-10	2	93	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	6.47E-18	2	93	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	5.4E-15	12	89	IPR003340	B3 DNA binding domain
Pfam	PF12776	2.5E-14	133	225	IPR024752	Myb/SANT-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence Send to blast
XFMKILVGGI NYSSVQIPTD FMHHLEGVAL DTATLTISSG QSWEVKVVKK ENDIMLEDGW 60 QKFRDDNDLS TGDVLLFTHS QNMSFDIKIY SPSGLERETG NLGEKGRFSD NDETDNDDSV 120 KEIETSYGTN ADWKDPNMAW RFIDFCLEAV PTGNRKTVRT MPWEDIRTRL KEEEHLDFTV 180 KQLIYRWNDL KKRYKIWSEL VAAAGNAYDP IKNKIKWSKK KWEQYLKEKP EARKFSRRPL 240 EHPMKMKALF DN

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3779	22	44