PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_15344_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family NAC
Protein Properties Length: 319aa    MW: 35562 Da    PI: 9.8776
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_15344_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM104.61.3e-325812957129
                                   NAM  57 ewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                                           + yfFs rd+ky+tg r+nrat++gyWk+tgkdke+++ +g lvg+kktLvfykgrapkgekt+Wvmheyrle
  cra_locus_15344_iso_1_len_1097_ver_3  58 RFYFFSLRDRKYPTGMRTNRATEAGYWKTTGKDKEIFR-GGMLVGMKKTLVFYKGRAPKGEKTNWVMHEYRLE 129
                                           57************************************.********************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100535.4591149IPR003441NAC domain
SuperFamilySSF1019415.62E-3846149IPR003441NAC domain
PfamPF023651.6E-1554128IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
XGRGIATAAS SSRLKSCWFI IEEKRPRAVS LKTDSPFTIL SSCLPFSRME ENLPPGFRFY  60
FFSLRDRKYP TGMRTNRATE AGYWKTTGKD KEIFRGGMLV GMKKTLVFYK GRAPKGEKTN  120
WVMHEYRLEA KLAFKPTKEE WVVCRIFQKS STVKKPQQIT SSPHESMESA PCDTNTIATN  180
ELGDIELANF SNLAANSSSS NIIGISPVDV LNWNALREAA NVLPQLTSSW PHNSTPTMSP  240
NLLFRALQLR NIANTTDYNS LMIGASPQGI NSHFGNDFIT SSHIAAASGA SSSSRVIIDH  300
NSVQQPHQEQ PFNLDSNIW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-305915573171NO APICAL MERISTEM PROTEIN
1ut4_B3e-305915573171NO APICAL MERISTEM PROTEIN
1ut7_A3e-305915573171NO APICAL MERISTEM PROTEIN
1ut7_B3e-305915573171NO APICAL MERISTEM PROTEIN
4dul_A3e-305915573171NAC domain-containing protein 19
4dul_B3e-305915573171NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027124647.11e-103NAC domain-containing protein 46-like
RefseqXP_027167280.11e-103NAC domain-containing protein 46
TrEMBLA0A068TSV31e-100A0A068TSV3_COFCA; Uncharacterized protein
STRINGPOPTR_0015s03700.18e-86(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15224279