PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_15356_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

NAC

Protein Properties

Length: 296aa MW: 32447.5 Da PI: 8.0935

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_15356_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	75.5	1.2e-23	62	195	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk..........lelee.......vikev.diykvePwdLpkkvkaee 55 lp+G++F+P+d+e++ e+L++kv ++ + +i+ +i++++P++Lp cra_locus_15356_iso_1_len_1360_ver_3 62 LPAGVKFDPSDQEII-EHLEAKVVVRSdlddgnklfiH---PlidefiqTIDGEnGICYTHPEKLPGV----- 125 799**********.99999888867666666651...044443323554445********32..... PP NAM 56 kewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmhey 126 ++ +++++ky+ + + + + ++tgk+++v++ kg+++g kk+Lv+y gr++k+ekt+Wvmh+y cra_locus_15356_iso_1_len_1360_ver_3 126 SKDGLVHEKEEKYTPTSTAAK----PVGHKTGKTRPVIV-KGKVKGYKKILVLYtnYGRQRKPEKTNWVMHQY 193 333356788888865444444....4459******.999*******66589************ PP NAM 127 rl 128 +l cra_locus_15356_iso_1_len_1360_ver_3 194 HL 195 98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.31E-28	51	214	IPR003441	NAC domain
PROSITE profile	PS51005	25.07	62	214	IPR003441	NAC domain
Pfam	PF02365	6.9E-11	63	195	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MTCSNSKTDQ TSADHLHHHS NNGTNVDSQK IGNKIIMSCP SCGLSMKCQE KRSSGIKELP 60 GLPAGVKFDP SDQEIIEHLE AKVVVRSDLD DGNKLFIHPL IDEFIQTIDG ENGICYTHPE 120 KLPGVSKDGL VHEKEEKYTP TSTAAKPVGH KTGKTRPVIV KGKVKGYKKI LVLYTNYGRQ 180 RKPEKTNWVM HQYHLGNNED EKEGELVVSK VFYQTQPRQC GGGSGGGGSS VKDLSPPVKG 240 NGRSGHPSNN PHHLNNPVAL VEYYNSTLIS FDQCQGNQTG SRLVPNINIP DDSFLP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269\|PubMed:18952777, ECO:0000269\|PubMed:22133261}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017970130.1	1e-101	PREDICTED: NAC domain-containing protein 73
Swissprot	O49459	2e-84	NAC73_ARATH; NAC domain-containing protein 73
TrEMBL	A0A068V5D4	1e-105	A0A068V5D4_COFCA; Uncharacterized protein
STRING	EOX99534	1e-100	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2875	24	54

Publications ? help Back to Top
Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE CressExpress: a tool for large-scale mining of expression data from Arabidopsis. Plant Physiol., 2008. 147(3): p. 1004-16 [PMID:18467456] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195] Jervis J, et al. A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood. Phytochemistry, 2015. 115: p. 112-20 [PMID:25771508]