PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_1542_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

MYB_related

Protein Properties

Length: 209aa MW: 23730.3 Da PI: 9.6426

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_1542_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	39.8	1.1e-12	56	100	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E+ +++ + + +G+g+W+ I+r + +t+ q+ s+ qky cra_locus_1542_iso_2_len_1406_ver_3 56 PWTEDEHRRFLLGLQAHGKGDWRNISRNFVRSKTPTQVASHAQKY 100 7***************************9***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.2E-10	46	105	IPR009057	Homeodomain-like
PROSITE profile	PS51294	16.379	48	105	IPR017930	Myb domain
SuperFamily	SSF46689	1.79E-16	50	104	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.9E-17	52	104	IPR006447	Myb domain, plants
SMART	SM00717	2.9E-9	53	103	IPR001005	SANT/Myb domain
Pfam	PF00249	4.9E-10	56	100	IPR001005	SANT/Myb domain
CDD	cd00167	8.87E-9	56	101	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 209 aa Download sequence Send to blast
MATLYPPSSY MGNSNWILPQ NKSSRWTEEE NKQFESALAL IDERRTCDQE RKKGIPWTED 60 EHRRFLLGLQ AHGKGDWRNI SRNFVRSKTP TQVASHAQKY FLRQLSGGKD KKRPSIHDIT 120 TVHLPNTSPS DDNKSPNSSD KSAPSASSKL LLDWNNSNDG LLMVFDSNHG NESMESLFDI 180 ASRGHRYAAN ICTTANSRFH IQPTKYVHG

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269\|PubMed:11937495, ECO:0000269\|PubMed:9118809}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027110847.1	3e-86	transcription factor DIVARICATA-like
Refseq	XP_027110848.1	3e-86	transcription factor DIVARICATA-like
Swissprot	Q8S9H7	1e-47	DIV_ANTMA; Transcription factor DIVARICATA
TrEMBL	A0A068V2E5	6e-85	A0A068V2E5_COFCA; Uncharacterized protein
STRING	VIT_13s0019g03370.t01	2e-65	(Vitis vinifera)

Publications ? help Back to Top
Galego L,Almeida J Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers. Genes Dev., 2002. 16(7): p. 880-91 [PMID:11937495] Almeida J,Rocheta M,Galego L Genetic control of flower shape in Antirrhinum majus. Development, 1997. 124(7): p. 1387-92 [PMID:9118809]