PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_1542_iso_3

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

MYB_related

Protein Properties

Length: 160aa MW: 17939 Da PI: 9.9809

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_1542_iso_3	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.4	2.8e-07	15	51	11	47
HHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 11 llvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +++ + + +G+g+W+ I+r + +t+ q+ s+ qky cra_locus_1542_iso_3_len_1081_ver_3 15 RFLLGLQAHGKGDWRNISRNFVRSKTPTQVASHAQKY 51 7888999*************9***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.45E-9	14	55	IPR009057	Homeodomain-like
CDD	cd00167	1.39E-4	14	52	No hit	No description
TIGRFAMs	TIGR01557	7.5E-11	14	55	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	8.1E-5	15	51	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 160 aa Download sequence Send to blast
MIIDLDTAHV FDYRRFLLGL QAHGKGDWRN ISRNFVRSKT PTQVASHAQK YFLRQLSGGK 60 DKKRPSIHDI TTVHLPNTSP SDDNKSPNSS DKSAPSASSK LLLDWNNSND GLLMVFDSNH 120 GNESMESLFD IASRGHRYAA NICTTANSRF HIQPTKYVHG

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269\|PubMed:11937495, ECO:0000269\|PubMed:9118809}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027110847.1	8e-74	transcription factor DIVARICATA-like
Refseq	XP_027110848.1	8e-74	transcription factor DIVARICATA-like
Swissprot	Q8S9H7	1e-36	DIV_ANTMA; Transcription factor DIVARICATA
TrEMBL	A0A068V2E5	2e-72	A0A068V2E5_COFCA; Uncharacterized protein
STRING	VIT_13s0019g03370.t01	1e-52	(Vitis vinifera)

Publications ? help Back to Top
Galego L,Almeida J Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers. Genes Dev., 2002. 16(7): p. 880-91 [PMID:11937495] Almeida J,Rocheta M,Galego L Genetic control of flower shape in Antirrhinum majus. Development, 1997. 124(7): p. 1387-92 [PMID:9118809]