PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_15449_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

HSF

Protein Properties

Length: 277aa MW: 32654.4 Da PI: 5.6343

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_15449_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	80.5	2.5e-25	2	84	12	103
TGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESX CS HSF_DNA-bind 12 deelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhks 85 +++++++isw+++g+sf+v+d+++fa +vL++yF+h++f+SF+ QLn+Y Fkk++ ++ eF++++ cra_locus_15449_iso_1_len_971_ver_3 2 SPKTDSIISWNAKGTSFIVKDQHTFAAQVLKNYFRHDKFSSFIIQLNTYCFKKISWDK---------LEFQNEW 66 57899*************************************************99.........78* PP XXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 86 Fkkgkkellekikrkkse 103 F++gkk+ l++ikr++++ cra_locus_15449_iso_1_len_971_ver_3 67 FRRGKKHWLKNIKRRNQK 84 *************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46785	5.58E-21	2	81	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	5.8E-24	2	81	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	5.1E-22	3	81	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SMART	SM00415	1.3E-23	3	81	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence Send to blast
XSPKTDSIIS WNAKGTSFIV KDQHTFAAQV LKNYFRHDKF SSFIIQLNTY CFKKISWDKL 60 EFQNEWFRRG KKHWLKNIKR RNQKLHNLHQ CRDAYPESDS DISELMKEFH DLRHEHNALM 120 AEIKKXNEWH TSAEEKMAVL KKRAERSANK QQKMARFMAV WMQKNEMQGA NKCSLEGPEI 180 ESLMEELENE GNDMFLTVEL CTQNQENDKN TICGVSSSEL VLLEKQLMED LEDFQDVPTE 240 ELTKFETHMV IDLEDLIEGP ADWKEYTKEL MGTPTNS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	4e-16	3	81	40	129	Heat shock factor protein 1
5d5v_B	4e-16	3	81	40	129	Heat shock factor protein 1
5d5v_D	4e-16	3	81	40	129	Heat shock factor protein 1

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	74	80	LKNIKRR

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA16030	2	6