PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_15518_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family ERF
Protein Properties Length: 195aa    MW: 21671.3 Da    PI: 7.4998
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_15518_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.72.8e-182272155
                                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                         ++ykGVr ++ +g+Wv+eIr p   ++++r++lg++ t+e Aa+a++aa  +l+g
  cra_locus_15518_iso_1_len_830_ver_3 22 KKYKGVRMRS-WGSWVSEIRAP---NQKTRIWLGSYSTPEAAARAYDAALICLKG 72
                                         59*****998.**********9...336***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.74E-192284No hitNo description
Gene3DG3DSA:3.30.730.101.4E-282383IPR001471AP2/ERF domain
PROSITE profilePS5103221.3512382IPR001471AP2/ERF domain
PfamPF008472.3E-112372IPR001471AP2/ERF domain
SMARTSM003801.9E-332388IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-182382IPR016177DNA-binding domain
PRINTSPR003671.2E-82435IPR001471AP2/ERF domain
PRINTSPR003671.2E-84662IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0034605Biological Processcellular response to heat
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071497Biological Processcellular response to freezing
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MVKKTTTDQK KMQPKSVISN KKKYKGVRMR SWGSWVSEIR APNQKTRIWL GSYSTPEAAA  60
RAYDAALICL KGTSANANLN FPNNYSSSAV AAAETTINMS PKSIQRIAAA AAAAANGTDH  120
VFPAQPQPQP SSSSSSSSPI EDDLMISVPW YNFDSPKYRF MDHDETAAFF FDPLMNNNIE  180
DFVYEEELGD DIRLW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-131586676Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in the regulation of plant development and tolerance to abiotic stresses (PubMed:21069430). Involved in salt and osmotic stress response pathways. May be regulated by the stress-related genes RD29A, RD22, DREB1A or P5CS during stress response (PubMed:27137403). Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:21069430, ECO:0000269|PubMed:27137403}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00156DAPTransfer from AT1G21910Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA) and ethylene. Down-regulated by freezing and heat stresses. {ECO:0000269|PubMed:21069430}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024971409.14e-41ethylene-responsive transcription factor ERF014-like
SwissprotQ9SFE46e-38ERF12_ARATH; Ethylene-responsive transcription factor ERF012
TrEMBLA0A103YCW09e-40A0A103YCW0_CYNCS; AP2/ERF domain-containing protein
STRINGXP_010530195.12e-38(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA61772435
Publications ? help Back to Top
  1. Kazama D,Kurusu T,Mitsuda N,Ohme-Takagi M,Tada Y
    Involvement of elevated proline accumulation in enhanced osmotic stress tolerance in Arabidopsis conferred by chimeric repressor gene silencing technology.
    Plant Signal Behav, 2014. 9(3): p. e28211
    [PMID:24614501]
  2. Kazama D, et al.
    Identification of Chimeric Repressors that Confer Salt and Osmotic Stress Tolerance in Arabidopsis.
    Plants (Basel), 2013. 2(4): p. 769-85
    [PMID:27137403]