PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_15592_iso_2
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family HB-other
Protein Properties Length: 203aa    MW: 22646.9 Da    PI: 10.5172
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_15592_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox642.2e-20141192556
                                          SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                             Homeobox   5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                          ++++++q+  Le++F+++++p++++r++L+++lgL+ +q+k+WFqN+R++ k
  cra_locus_15592_iso_2_len_609_ver_3 141 HRHSPQQIYHLEAFFKECPHPDEKQRQQLSRNLGLEPKQIKFWFQNKRTQIK 192
                                          6789********************************************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.4E-21120192IPR009057Homeodomain-like
SuperFamilySSF466898.55E-19127194IPR009057Homeodomain-like
PROSITE profilePS5007116.471134194IPR001356Homeobox domain
SMARTSM003891.2E-16136198IPR001356Homeobox domain
PfamPF000467.0E-18141192IPR001356Homeobox domain
CDDcd000864.16E-15141195No hitNo description
PROSITE patternPS000270169192IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
LAGAESSSMN PAQSRKAQKA AKTQAEKIIF NIHACXNLSF PVSSVPVSVS EEQIGGRMIL  60
CGLAGRGKGS GGRGSRSSPV RRGDKWQAVG VGRRSEFQND DRRDKQCFSX LQAMDFISGE  120
RGSGGEHEEA SNRERGKKSC HRHSPQQIYH LEAFFKECPH PDEKQRQQLS RNLGLEPKQI  180
KFWFQNKRTQ IKAQSERADN SVL
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13886814