PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_15704_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C3H
Protein Properties Length: 235aa    MW: 25815.8 Da    PI: 8.2923
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_15704_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.85.7e-115072527
                                          --SGGGGTS--TTTTT-SS-SSS CS
                               zf-CCCH  5 lCrffartGtCkyGdrCkFaHgp 27
                                           C +++rtG C yG++C+++H++
  cra_locus_15704_iso_1_len_1197_ver_3 50 DCVYYMRTGSCGYGAKCRYNHPR 72
                                          69*******************96 PP
2zf-CCCH38.22.4e-12163189127
                                           --S---SGGGGTS--TTTTT-SS-SSS CS
                               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                                           +++++C++++++G CkyG++Ck++H+p
  cra_locus_15704_iso_1_len_1197_ver_3 163 PGQPECQYYLKNGDCKYGSSCKYHHPP 189
                                           5789*********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.7374573IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-54572IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-65073IPR000571Zinc finger, CCCH-type
PfamPF006424.1E-85072IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-55172IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-6162189IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.342162190IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-9164189IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.45E-6166190IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.8E-5168188IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MELYGRGAAK IGSGQNPNAE WVPETGLEEP LSKLGLWGRE AYPERSGVLD CVYYMRTGSC  60
GYGAKCRYNH PRDRGSVGGA VLIGGAEYEY PERIGEPECQ YYLAGAINHT FSPGSQSAAG  120
ATSLYGVSQF ASSPPGVSGH YPSFPTSGTL GSKQKDRNFP ERPGQPECQY YLKNGDCKYG  180
SSCKYHHPPD WVVTKTYGLL SPLGLPLRPV CTICSPHKYI RHLFGMFYYL XRPNL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009776617.17e-79PREDICTED: zinc finger CCCH domain-containing protein 32-like isoform X2
RefseqXP_016506830.17e-79PREDICTED: zinc finger CCCH domain-containing protein 32-like isoform X2
TrEMBLA0A1S4D0652e-77A0A1S4D065_TOBAC; zinc finger CCCH domain-containing protein 32-like isoform X2
TrEMBLA0A1U7W9D82e-77A0A1U7W9D8_NICSY; zinc finger CCCH domain-containing protein 32-like isoform X2
STRINGXP_009776613.13e-47(Nicotiana sylvestris)