PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_15704_iso_4
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C3H
Protein Properties Length: 373aa    MW: 40018.9 Da    PI: 9.2149
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_15704_iso_4genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.21.9e-10222727
                                          SGGGGTS--TTTTT-SS-SSS CS
                               zf-CCCH  7 rffartGtCkyGdrCkFaHgp 27
                                          ++++rtGtCk+G++CkF+H++
  cra_locus_15704_iso_4_len_1374_ver_3  2 QYYLRTGTCKFGATCKFHHPR 22
                                          59*****************96 PP
2zf-CCCH36.96.2e-124468327
                                          S---SGGGGTS--TTTTT-SS-SSS CS
                               zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                                          +++C+++++tG+Ck+G +CkF+H++
  cra_locus_15704_iso_4_len_1374_ver_3 44 EKECSYYLKTGQCKFGITCKFHHPQ 68
                                          689********************97 PP
3zf-CCCH37.44.4e-12197223127
                                           --S---SGGGGTS--TTTTT-SS-SSS CS
                               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                                           +++++C++++++G CkyG++Ck++H+p
  cra_locus_15704_iso_4_len_1374_ver_3 197 PGQPECQYYLKNGDCKYGSSCKYHHPP 223
                                           5789*********************97 PP
4zf-CCCH27.74.7e-09245269327
                                           S---SGGGGTS--TTTTT-SS-SSS CS
                               zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                                           +  C+f+++ G+Ck+G +CkF H++
  cra_locus_15704_iso_4_len_1374_ver_3 245 MQSCSFYLQKGHCKFGQNCKFDHPM 269
                                           567********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.418123IPR000571Zinc finger, CCCH-type
SMARTSM003562.6222IPR000571Zinc finger, CCCH-type
PfamPF006425.9E-8222IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.0E-4322IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-64169IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.4274169IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-44368IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-94468IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-44767IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.342196224IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-6196223IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-9198223IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.37E-6200224IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-4202222IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.389242270IPR000571Zinc finger, CCCH-type
SMARTSM003564.6E-5242269IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-6244272IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-6244269IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4248267IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
XQYYLRTGTC KFGATCKFHH PRNAGGSLIN VPLNIYGYPL RMGEKECSYY LKTGQCKFGI  60
TCKFHHPQPA GTSVPATARP FYPTVQSASA PLEQFGAASS GYRVQRPPLL TSSYLPGAYG  120
AVLLHAGMVP IPNWSPYAGA INHTFSPGSQ SAAGATSLYG VSQFASSPPG VSGHYPSFPT  180
SGTLGSKQKD RNFPERPGQP ECQYYLKNGD CKYGSSCKYH HPPDWVVTKT YGLLSPLGLP  240
LRPGMQSCSF YLQKGHCKFG QNCKFDHPMG TLEYSPSASS LTDIPIASYM LSSSAMVATV  300
SFPELQADFI SGTKLGASTI KDQPYGSSLT SSVGLVISRS GPFSLSTVQI SSQSSNSNIA  360
RNKREDGEVH HPG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027116915.11e-175zinc finger CCCH domain-containing protein 32-like isoform X3
RefseqXP_027116923.11e-175zinc finger CCCH domain-containing protein 32-like isoform X4
SwissprotQ84W911e-133C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A068U7E01e-173A0A068U7E0_COFCA; Uncharacterized protein
STRINGXP_009776613.11e-152(Nicotiana sylvestris)