PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_15704_iso_5

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

C3H

Protein Properties

Length: 339aa MW: 36337.5 Da PI: 7.4674

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_15704_iso_5	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	33.1	9.2e-11	50	72	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C +++rtG C yG++C+++H++ cra_locus_15704_iso_5_len_1766_ver_3 50 DCVYYMRTGSCGYGAKCRYNHPR 72 69*******************96 PP
2	zf-CCCH	37.5	3.9e-12	163	189	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++++++G CkyG++Ck++H+p cra_locus_15704_iso_5_len_1766_ver_3 163 PGQPECQYYLKNGDCKYGSSCKYHHPP 189 5789*********************97 PP
3	zf-CCCH	27.9	4.1e-09	211	235	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + C+f+++ G+Ck+G +CkF H++ cra_locus_15704_iso_5_len_1766_ver_3 211 MQSCSFYLQKGHCKFGQNCKFDHPM 235 567********************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	12.737	45	73	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.8E-5	45	72	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	6.67E-6	50	73	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	6.5E-8	50	72	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	4.4E-5	51	72	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.8E-6	162	189	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	16.342	162	190	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.9E-9	164	189	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	7.46E-6	166	190	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.3E-4	168	188	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	4.6E-5	208	235	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.389	208	236	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.1E-6	210	235	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.83E-6	210	238	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.2E-4	214	233	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence Send to blast
MELYGRGAAK IGSGQNPNAE WVPETGLEEP LSKLGLWGRE AYPERSGVLD CVYYMRTGSC 60 GYGAKCRYNH PRDRGSVGGA VLIGGAEYEY PEELENQSVS ITYAGAINHT FSPGSQSAAG 120 ATSLYGVSQF ASSPPGVSGH YPSFPTSGTL GSKQKDRNFP ERPGQPECQY YLKNGDCKYG 180 SSCKYHHPPD WVVTKTYGLL SPLGLPLRPG MQSCSFYLQK GHCKFGQNCK FDHPMGTLEY 240 SPSASSLTDI PIASYMLSSS AMVATVSFPE LQADFISGTK LGASTIKDQP YGSSLTSSVG 300 LVISRSGPFS LSTVQISSQS SNSNIARNKR EDGEVHHPG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009776617.1	1e-109	PREDICTED: zinc finger CCCH domain-containing protein 32-like isoform X2
Refseq	XP_016506830.1	1e-109	PREDICTED: zinc finger CCCH domain-containing protein 32-like isoform X2
TrEMBL	A0A1S4D065	1e-108	A0A1S4D065_TOBAC; zinc finger CCCH domain-containing protein 32-like isoform X2
TrEMBL	A0A1U7W9D8	1e-108	A0A1U7W9D8_NICSY; zinc finger CCCH domain-containing protein 32-like isoform X2
STRING	XP_009776613.1	2e-78	(Nicotiana sylvestris)