PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_15765_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

Dof

Protein Properties

Length: 327aa MW: 34863.2 Da PI: 9.6005

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_15765_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	120.3	7e-38	16	73	4	61
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +kcprCds+ntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rk k+ cra_locus_15765_iso_1_len_1173_ver_3 16 PPQKCPRCDSNNTKFCYYNNYSLTQPRYFCKTCRRYWTQGGTLRNVPVGGGCRKGKRP 73 5689**************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50884	28.863	18	72	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.3E-32	18	72	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	4.0E-24	19	72	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	20	56	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
DQNNEGQGGP NQPPPPPQKC PRCDSNNTKF CYYNNYSLTQ PRYFCKTCRR YWTQGGTLRN 60 VPVGGGCRKG KRPKTSSSST SSTTTPSSSS TGQRDTPVTR SSLPNPSPPP PAVPPVPLQQ 120 QLQLPPHLIQ TISGLPTSQS LRNLGWAGYG HGHAPPPTSS LYHSSGGLLS SLTAMQSFNR 180 PQTRINPPLM NLGGNSTGSN MPIFHGGGFN FPSTNSMIRS HQQQVQVQPQ MHQSIGYQGM 240 INDQDRDESE PLIYPPEQNL GGGQPSPAAA TTTLISSWNN HGDNNNNANP SGSSSSLNFW 300 NNSSGGGSAS SGNPNQWPNL PGFGSSP

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419