PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_15972_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

TCP

Protein Properties

Length: 171aa MW: 17766.9 Da PI: 11.2775

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_15972_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	77.9	2.9e-24	125	170	2	47
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdskt 47 +++k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++t cra_locus_15972_iso_1_len_509_ver_3 125 PAQKRSTKDRHTKVDGRGRRIRMPAACAARVFQLTRELGHKSDGET 170 579******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	3.3E-19	130	170	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	20.095	131	171	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 171 aa Download sequence Send to blast
XTSSSSSSTT SSTATASSQP NYHFTPVHLH HHHHPHHQHA GRSSPFVTSI SIPSGLTTTT 60 SAPASTTPGG AGPSGSSANS NASGSTSSAT APPAHLVDAS LAIATRSEAL IDPSKKPQPQ 120 PQQHPAQKRS TKDRHTKVDG RGRRIRMPAA CAARVFQLTR ELGHKSDGET X

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019171780.1	4e-37	PREDICTED: transcription factor TCP8-like isoform X1
Refseq	XP_019171781.1	4e-37	PREDICTED: transcription factor TCP8-like isoform X1
TrEMBL	A0A068TNK8	1e-32	A0A068TNK8_COFCA; Uncharacterized protein
STRING	Solyc01g103780.2.1	2e-33	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA248	24	201