PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_16006_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

C2H2

Protein Properties

Length: 225aa MW: 24923.1 Da PI: 5.2681

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_16006_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.5	0.00011	42	64	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C + F++ L H+++H cra_locus_16006_iso_1_len_776_ver_3 42 YTCTFCRREFRSAQALGGHMNVH 64 9********************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.31E-6	39	69	No hit	No description
SMART	SM00355	0.0066	42	64	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	1.7E-5	42	65	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	11.157	42	69	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	44	64	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
XSLSSNSTTS WMWNPNQEED DSWEIRAFEQ DSGNITWPPR SYTCTFCRRE FRSAQALGGH 60 MNVHRRDRAR LHQPSIHTGN PKANANTNAS SSVVATTNST LIIPAQEFVR NGGLCLLYSL 120 HSPNNGILNP NKVNSCMDSP STLLSISPFE GNNLVCPNYP PTTYTSTYPI TPQSVNSISI 180 CQSSNNTEPS ASNSNDNNNP DTGEIKKDLE IEEELDLELR LGRSR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1njq_A	3e-13	37	64	2	29	superman protein
2l1o_A	3e-13	37	64	2	29	Transcriptional regulator SUPERMAN
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027084413.1	6e-80	zinc finger protein 10-like
Refseq	XP_027183021.1	6e-80	zinc finger protein 10-like
TrEMBL	A0A068UXM0	1e-78	A0A068UXM0_COFCA; Uncharacterized protein
STRING	Aquca_026_00394.1	5e-66	(Aquilegia coerulea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5953	21	33