PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_16251_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family MYB_related
Protein Properties Length: 166aa    MW: 17516 Da    PI: 7.6918
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_16251_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.13.5e-1757102147
                                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                          +g+W++eEd  l ++v ++G ++W +Iar ++ gR++k+c++rw + 
  cra_locus_16251_iso_1_len_925_ver_3  57 KGPWSPEEDVMLSRLVSKFGARNWGLIARGIP-GRSGKSCRLRWCNQ 102
                                          79******************************.***********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.77552107IPR017930Myb domain
SuperFamilySSF466891.79E-1753113IPR009057Homeodomain-like
SMARTSM007175.6E-1556105IPR001005SANT/Myb domain
PfamPF002499.5E-1757102IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-2158113IPR009057Homeodomain-like
CDDcd001671.99E-1559101No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MAEVAVENGA KAIDAVVDDG EQVVVDAAVD GGSGAEMLVE GYGNDGGAEG SGKGRVKGPW  60
SPEEDVMLSR LVSKFGARNW GLIARGIPGR SGKSCRLRWC NQLDPGVKHK PFSGKFCCLF  120
NLGSLSPFFR SNASFCADTL FVKSNVCALK QFFLSAFSSG CILVNV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-1556108658B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024935245.17e-35LOW QUALITY PROTEIN: transcription factor MYB1-like
TrEMBLA0A2R6RWV39e-35A0A2R6RWV3_ACTCH; Transcription factor like
STRINGEOY073371e-32(Theobroma cacao)