PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_16284_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family WRKY
Protein Properties Length: 355aa    MW: 39722.4 Da    PI: 6.7109
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_16284_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY75.94.7e-24144204159
                                           ---SS-EEEEEEE--TT-SS-EEEEEE-ST..T---EEEEEE-SSSTTEEEEEEES--SS- CS
                                  WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa..gCpvkkkversaedpkvveitYegeHnhe 59 
                                           ++D+y+WrKYGqK++  s+fpr Y+rCt++  gC+++k+v+  +++p + ++tY g+H+++
  cra_locus_16284_iso_1_len_1479_ver_3 144 MEDEYAWRKYGQKDILRSNFPRCYFRCTHKneGCKATKQVQIVTKNPLMYQTTYFGQHTCN 204
                                           58***************************9999**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.7E-23131204IPR003657WRKY domain
PROSITE profilePS5081117.89139201IPR003657WRKY domain
SuperFamilySSF1182901.7E-22142204IPR003657WRKY domain
SMARTSM007742.3E-32144205IPR003657WRKY domain
PfamPF031061.8E-23145203IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009862Biological Processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0009864Biological Processinduced systemic resistance, jasmonic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
XVNPPPPNPR PLPPPSSVPV AVIMNTTMAW HDRKKLLEEI LLKGKESATK LQTLLHQKPN  60
NSPYDVVSAA ELSVQIFRSF TETLAVLGPD DIRQIVAADG MARSSSSEIT DGFIRKKSAG  120
VKYRKGSYKR RNVSETETKY SSTMEDEYAW RKYGQKDILR SNFPRCYFRC THKNEGCKAT  180
KQVQIVTKNP LMYQTTYFGQ HTCNDHLLMR APHHDIIQEI SSDPMDSCLL SFQTTVNNIP  240
SSSSNNQAIK PLPKQVIVAV TKEDSDDFSS DGKSLPSHST LLQELVTSGS SSRSPANLIP  300
SKTRSAYLEE VISGNYSCSS NNTLDDLDMD IEVFNTKFGD LDNNFCFDEE ISDLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-15144203868OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00408DAPTransfer from AT3G56400Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027104131.12e-75WRKY DNA-binding transcription factor 70-like
TrEMBLF6KW330.0F6KW33_CATRO; WRKY1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA61992233