PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_16284_iso_3
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family WRKY
Protein Properties Length: 328aa    MW: 36932.4 Da    PI: 6.5109
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_16284_iso_3genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY76.14.1e-24117177159
                                           ---SS-EEEEEEE--TT-SS-EEEEEE-ST..T---EEEEEE-SSSTTEEEEEEES--SS- CS
                                  WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa..gCpvkkkversaedpkvveitYegeHnhe 59 
                                           ++D+y+WrKYGqK++  s+fpr Y+rCt++  gC+++k+v+  +++p + ++tY g+H+++
  cra_locus_16284_iso_3_len_1580_ver_3 117 MEDEYAWRKYGQKDILRSNFPRCYFRCTHKneGCKATKQVQIVTKNPLMYQTTYFGQHTCN 177
                                           58***************************9999**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.9E-23104177IPR003657WRKY domain
PROSITE profilePS5081117.89112174IPR003657WRKY domain
SuperFamilySSF1182901.44E-22115177IPR003657WRKY domain
SMARTSM007742.3E-32117178IPR003657WRKY domain
PfamPF031061.6E-23118176IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009862Biological Processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0009864Biological Processinduced systemic resistance, jasmonic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MAWHDRKKLL EEILLKGKES ATKLQTLLHQ KPNNSPYDVV SAAELSVQIF RSFTETLAVL  60
GPDDIRQIVA ADGMARSSSS EITDGFIRKK SAGVKYRKGS YKRRNVSETE TKYSSTMEDE  120
YAWRKYGQKD ILRSNFPRCY FRCTHKNEGC KATKQVQIVT KNPLMYQTTY FGQHTCNDHL  180
LMRAPHHDII QEISSDPMDS CLLSFQTTVN NIPSSSSNNQ AIKPLPKQVI VAVTKEDSDD  240
FSSDGKSLPS HSTLLQELVT SGSSSRSPAN LIPSKTRSAY LEEVISGNYS CSSNNTLDDL  300
DMDIEVFNTK FGDLDNNFCF DEEISDLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A4e-15117176868OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00408DAPTransfer from AT3G56400Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027104131.14e-76WRKY DNA-binding transcription factor 70-like
TrEMBLF6KW330.0F6KW33_CATRO; WRKY1