PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_16332_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

NAC

Protein Properties

Length: 258aa MW: 29866.6 Da PI: 9.3059

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_16332_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	168.6	2.1e-52	14	139	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrk 74 lppGfrF Ptdeel+v+yL++kv+g++++l ++i evd+yk++Pw Lp+k+ +ekewyfFs+rd+ky++g+r+ cra_locus_16332_iso_2_len_920_ver_3 14 LPPGFRFYPTDEELLVQYLCRKVAGHHFNL-QIIGEVDLYKFDPWVLPSKAIFGEKEWYFFSPRDRKYPNGSRP 86 79**************************.89***********7777799*************** PP NAM 75 nratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 nr++ sgyWkatg+dk +++ +g++vg+kk Lvfy g+apkg+kt+W+mheyrl cra_locus_16332_iso_2_len_920_ver_3 87 NRVAGSGYWKATGTDKIITT-EGRKVGIKKALVFYVGKAPKGTKTNWIMHEYRL 139 ************9999.999**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.75E-64	9	165	IPR003441	NAC domain
PROSITE profile	PS51005	59.567	14	165	IPR003441	NAC domain
Pfam	PF02365	1.9E-26	15	139	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0009737	Biological Process	response to abscisic acid
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MGVQETDPLA QLSLPPGFRF YPTDEELLVQ YLCRKVAGHH FNLQIIGEVD LYKFDPWVLP 60 SKAIFGEKEW YFFSPRDRKY PNGSRPNRVA GSGYWKATGT DKIITTEGRK VGIKKALVFY 120 VGKAPKGTKT NWIMHEYRLA NVDRSAGKRT NLRLDDWVLC RIYNKKGTLE KHYNVDQKEV 180 HFSDSEEQKP KVELLPYNRT GVPAPQVQVP QFVPPQKMND YSHFDTSETL PKFHTDSSSS 240 EEFTNDKEVQ SKPKWNEX

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	1e-103	1	171	7	174	NAC domain-containing protein 19
3swm_B	1e-103	1	171	7	174	NAC domain-containing protein 19
3swm_C	1e-103	1	171	7	174	NAC domain-containing protein 19
3swm_D	1e-103	1	171	7	174	NAC domain-containing protein 19
3swp_A	1e-103	1	171	7	174	NAC domain-containing protein 19
3swp_B	1e-103	1	171	7	174	NAC domain-containing protein 19
3swp_C	1e-103	1	171	7	174	NAC domain-containing protein 19
3swp_D	1e-103	1	171	7	174	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates wounding-responsive genes (PubMed:28733419). Involved in jasmonate- and coronatine-mediated stomatal reopening in response to Pseudomonas syringae pv tomato DC3000 infection (PubMed:25005917). Regulates the expression of threonine deaminase 2 (TD2) through promoter binding (PubMed:28733419). {ECO:0000269\|PubMed:25005917, ECO:0000269\|PubMed:28733419}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by jasmonate (JA) (PubMed:25005917, PubMed:28733419, PubMed:30610166). Induced by wounding (PubMed:28733419, PubMed:25005917). Induced by infection with the fungal pathogen Botrytis cinerea (PubMed:28733419). Induced by coronatine (PubMed:25005917). {ECO:0000269\|PubMed:25005917, ECO:0000269\|PubMed:28733419, ECO:0000269\|PubMed:30610166}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011099683.1	1e-131	NAC domain-containing protein 2-like
Swissprot	A0A3Q7HH64	1e-104	JA2L_SOLLC; NAC domain-containing protein JA2L
TrEMBL	A0A2G9HDB1	1e-131	A0A2G9HDB1_9LAMI; Uncharacterized protein
STRING	XP_010674351.1	1e-111	(Beta vulgaris)

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Du M, et al. MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato. Plant Cell, 2017. 29(8): p. 1883-1906 [PMID:28733419] Liu Y, et al. MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop. Plant Cell, 2019. 31(1): p. 106-127 [PMID:30610166]