PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_1635_iso_2
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family HD-ZIP
Protein Properties Length: 202aa    MW: 23320.1 Da    PI: 7.5098
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_1635_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.41.4e-1992145356
                                         --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                            Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                         k++++t eq++ Le+ Fe ++++  e++ eLAk+lgL+ rq+ +WFqNrRa++k
  cra_locus_1635_iso_2_len_940_ver_3  92 KKRRLTVEQVQFLEKSFEVENKLEPERKIELAKELGLQPRQIAIWFQNRRARWK 145
                                         56789************************************************9 PP
2HD-ZIP_I/II131.82.7e-4291182192
                         HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalke 75 
                                         ekkrrl+ eqv++LE+sFe e+kLeperK ela+eLglqprq+a+WFqnrRAR+ktkqlEkdy++L+++y++lk+
  cra_locus_1635_iso_2_len_940_ver_3  91 EKKRRLTVEQVQFLEKSFEVENKLEPERKIELAKELGLQPRQIAIWFQNRRARWKTKQLEKDYDVLQASYNNLKA 165
                                         69************************************************************************* PP

                         HD-ZIP_I/II  76 enerLekeveeLreelk 92 
                                         + ++L ke+++L++e+ 
  cra_locus_1635_iso_2_len_940_ver_3 166 DYDSLLKEKDKLKAEVI 182
                                         *************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.75E-2076149IPR009057Homeodomain-like
PROSITE profilePS5007117.96187147IPR001356Homeobox domain
SMARTSM003893.8E-2090151IPR001356Homeobox domain
PfamPF000466.9E-1792145IPR001356Homeobox domain
CDDcd000866.13E-1892148No hitNo description
Gene3DG3DSA:1.10.10.606.8E-2193154IPR009057Homeodomain-like
PRINTSPR000311.5E-6118127IPR000047Helix-turn-helix motif
PROSITE patternPS000270122145IPR017970Homeobox, conserved site
PRINTSPR000311.5E-6127143IPR000047Helix-turn-helix motif
PfamPF021836.6E-16147182IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MAGRTLLYGS TGVASSVNPV PIQNQIVPGS SSEPHNSIFM SASSSSFLGP RSMVSFEDVN  60
GRKRTEKSFY GPFDQEDNGD EDLDEYFRQP EKKRRLTVEQ VQFLEKSFEV ENKLEPERKI  120
ELAKELGLQP RQIAIWFQNR RARWKTKQLE KDYDVLQASY NNLKADYDSL LKEKDKLKAE  180
VISSPFLNFV ISFPRNIVIW LX
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139147RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028088415.11e-83homeobox-leucine zipper protein HAT5-like
SwissprotQ022838e-44HAT5_ARATH; Homeobox-leucine zipper protein HAT5
TrEMBLA0A2R6QGY73e-87A0A2R6QGY7_ACTCH; Homeobox-leucine zipper protein
STRINGPOPTR_0015s07640.11e-82(Populus trichocarpa)
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Arce AL,Chan RL
    A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype.
    Plant Physiol., 2017. 175(3): p. 1238-1253
    [PMID:28956754]