PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_16374_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

NF-YB

Protein Properties

Length: 205aa MW: 22718.1 Da PI: 8.1736

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_16374_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	177	1.8e-55	27	122	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlG 75 ++qdrflPianvsrimkk lP+nakisk+aketvqecvsefisf+t+easdkcqrekrktingddllwa++tlG cra_locus_16374_iso_1_len_670_ver_3 27 KDQDRFLPIANVSRIMKKSLPSNAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLG 100 79********************************************************************** PP NF-YB 76 fedyveplkvylkkyrelegek 97 fe+yv +lkvyl+kyre egek cra_locus_16374_iso_1_len_670_ver_3 101 FENYVVSLKVYLNKYRENEGEK 122 *****************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	3.9E-53	23	135	IPR009072	Histone-fold
SuperFamily	SSF47113	6.83E-41	29	144	IPR009072	Histone-fold
Pfam	PF00808	1.0E-27	32	96	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	1.9E-19	60	78	No hit	No description
PROSITE pattern	PS00685	0	63	79	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	1.9E-19	79	97	No hit	No description
PRINTS	PR00615	1.9E-19	98	116	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence Send to blast
MTGRRNKNNS SPIGSPLSGD SSSNNNKDQD RFLPIANVSR IMKKSLPSNA KISKEAKETV 60 QECVSEFISF ITGEASDKCQ REKRKTINGD DLLWAMTTLG FENYVVSLKV YLNKYRENEG 120 EKTSMARDHQ DDQDSTPADF HSRKNGYYYS LEGANNYGDP AGRSVFGYGN NIIPAGVFNN 180 NIGKNISEIE GTANRVIATN LSPWG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	4e-48	27	117	2	92	Transcription factor HapC (Eurofung)
4g92_B	4e-48	27	117	2	92	Transcription factor HapC (Eurofung)
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027179779.1	4e-83	nuclear transcription factor Y subunit B-3-like
Swissprot	O23310	2e-60	NFYB3_ARATH; Nuclear transcription factor Y subunit B-3
TrEMBL	A0A068UXD0	9e-81	A0A068UXD0_COFCA; Uncharacterized protein
STRING	XP_006493850.1	8e-72	(Citrus sinensis)
STRING	XP_008362436.1	7e-72	(Malus domestica)
STRING	XP_008368639.1	7e-72	(Malus domestica)
STRING	XP_004304851.1	8e-72	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA111	24	356

Publications ? help Back to Top
Han X, et al. Overexpression of the poplar NF-YB7 transcription factor confers drought tolerance and improves water-use efficiency in Arabidopsis. J. Exp. Bot., 2013. 64(14): p. 4589-601 [PMID:24006421] Hwang YH, et al. Functional conservation of rice OsNF-YB/YC and Arabidopsis AtNF-YB/YC proteins in the regulation of flowering time. Plant Cell Rep., 2016. 35(4): p. 857-65 [PMID:26754793] Hossain MA, et al. Identification of Novel Components of the Unfolded Protein Response in Arabidopsis. Front Plant Sci, 2016. 7: p. 650 [PMID:27242851] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]