PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_16413_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family NAC
Protein Properties Length: 278aa    MW: 31664.6 Da    PI: 6.0419
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_16413_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM163.57.6e-51101391129
                                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkr 73 
                                           lppGfrF P+deelv++yL kk+++     ++++ e+d++++ePw+Lp+ +k +++ewyfFs rd+kyatg r
  cra_locus_16413_iso_1_len_1016_ver_3  10 LPPGFRFYPSDEELVCHYLYKKIANGGEVSKDTLVEIDLHTCEPWQLPEVAKLNSTEWYFFSFRDRKYATGFR 82 
                                           79**********************999888899***************88888999***************** PP

                                   NAM  74 knratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129
                                           +nrat++gyWkatgkd++v++  ++++vg++ktLvfyk+rap+g kt W+mhe+rle
  cra_locus_16413_iso_1_len_1016_ver_3  83 TNRATTTGYWKATGKDRTVIHPvTRSVVGMRKTLVFYKNRAPNGIKTGWIMHEFRLE 139
                                           ********************9988899***************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.28E-598157IPR003441NAC domain
PROSITE profilePS5100557.62210157IPR003441NAC domain
PfamPF023652.1E-2711138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MGLRDIGASL PPGFRFYPSD EELVCHYLYK KIANGGEVSK DTLVEIDLHT CEPWQLPEVA  60
KLNSTEWYFF SFRDRKYATG FRTNRATTTG YWKATGKDRT VIHPVTRSVV GMRKTLVFYK  120
NRAPNGIKTG WIMHEFRLEN PLLPPKEDWV LCRVFHKAKT ENNSDQYIDD FLPGGATSPT  180
LATSPPPDNS SFTARDYHHN ISAFSATHNP PQKTEISKSQ LLSPPPIDQI TPISKCEEEP  240
YGFLFDLSFG ETNLKDHNGV SVDLEEMQFD DDNGMIFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-47916316171NO APICAL MERISTEM PROTEIN
1ut4_B8e-47916316171NO APICAL MERISTEM PROTEIN
1ut7_A8e-47916316171NO APICAL MERISTEM PROTEIN
1ut7_B8e-47916316171NO APICAL MERISTEM PROTEIN
4dul_A8e-47916316171NAC domain-containing protein 19
4dul_B8e-47916316171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027096438.11e-127protein CUP-SHAPED COTYLEDON 2-like
SwissprotQ84TE62e-62NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLA0A068U6G41e-124A0A068U6G4_COFCA; Uncharacterized protein
STRINGXP_009607926.11e-117(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18822466
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]