PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_16413_iso_2
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family NAC
Protein Properties Length: 103aa    MW: 11983.8 Da    PI: 6.5032
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_16413_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM552.8e-171084164
                                  NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...........kvkaeekewyfFskr 64
                                         lppGfrF P+deelv++yL kk+++     ++++ e+d++++ePw+Lp            k +a+++e+ +++k+
  cra_locus_16413_iso_2_len_363_ver_3 10 LPPGFRFYPSDEELVCHYLYKKIANGGEVSKDTLVEIDLHTCEPWQLPGmfcpslpiyllKRRASTDELNYYIKE 84
                                         79**********************999888899***************447777777765333344455444444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-17862IPR003441NAC domain
PROSITE profilePS5100518.51610103IPR003441NAC domain
PfamPF023652.3E-91173IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 103 aa     Download sequence    Send to blast
MGLRDIGASL PPGFRFYPSD EELVCHYLYK KIANGGEVSK DTLVEIDLHT CEPWQLPGMF  60
CPSLPIYLLK RRASTDELNY YIKENDKLFI SFSYNFLRNL IRS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027094925.11e-31protein CUP-SHAPED COTYLEDON 2-like isoform X1
RefseqXP_027096438.11e-31protein CUP-SHAPED COTYLEDON 2-like
TrEMBLA0A068U6G43e-30A0A068U6G4_COFCA; Uncharacterized protein
TrEMBLA0A0A0KA393e-31A0A0A0KA39_CUCSA; Uncharacterized protein
STRINGXP_002529854.17e-30(Ricinus communis)