PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_1647_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family MYB_related
Protein Properties Length: 289aa    MW: 32028.1 Da    PI: 8.4575
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_1647_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.61.2e-124891146
                                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                                         r +WT++E++++++a +++  + Wk+I + +g  +t  q++s+ qk
  cra_locus_1647_iso_1_len_1453_ver_3 48 RESWTEQEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQK 91
                                         789*****************77.*********.**********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.31E-144291IPR009057Homeodomain-like
PROSITE profilePS5129413.2844397IPR017930Myb domain
TIGRFAMsTIGR015577.2E-164691IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.4E-64788IPR009057Homeodomain-like
SMARTSM007172.4E-104795IPR001005SANT/Myb domain
PfamPF002491.9E-104891IPR001005SANT/Myb domain
CDDcd001675.75E-85091No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MGLPGLHSLQ PVTNSNIAGQ NSNNSGSGVA ADDPSKKVRK PYTITKSRES WTEQEHDKFL  60
EALQLFDRDW KKIEAFVGSK TVIQIRSHAQ KAPKNAVHQV GGLVPSSSSL VEPTYVIRPD  120
SLSVPRNSFS NAALSPWTYN SAPTATMSHM SKDDVGLGGS IVVHNNSSSS NESTPRIWPL  180
NESNDQLKEK NKLPARMIPD FSQVYSFIGS IFDPSAKGDH LQRLRKMDPI NVETVLMLMR  240
NLSVNLMSPE FEDHRRVIVS YSVGREEDKE NVPNDIIKSI NRGNADICM
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027108430.11e-133protein REVEILLE 3-like isoform X1
RefseqXP_027115285.11e-133protein REVEILLE 3-like isoform X1
SwissprotQ8H0W37e-75RVE6_ARATH; Protein REVEILLE 6
TrEMBLA0A068UME01e-130A0A068UME0_COFCA; Uncharacterized protein
STRINGVIT_15s0046g02260.t011e-105(Vitis vinifera)
STRINGXP_009617756.11e-104(Nicotiana tomentosiformis)
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]