PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_16751_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family M-type_MADS
Protein Properties Length: 139aa    MW: 15500.9 Da    PI: 10.0691
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_16751_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF59.73.5e-191159149
                                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                                         k+ie +s+r vtfskRr+g++KKA EL+  ++a++a++++s +gk y y
  cra_locus_16751_iso_1_len_752_ver_3 11 KKIEKESRRMVTFSKRRKGLFKKADELCSKTGAKIAIVVISASGKPYPY 59
                                         68******************************************98866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006621.698363IPR002100Transcription factor, MADS-box
SMARTSM004328.2E-20362IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.45E-20463IPR002100Transcription factor, MADS-box
PRINTSPR004048.3E-15525IPR002100Transcription factor, MADS-box
PfamPF003191.9E-211259IPR002100Transcription factor, MADS-box
CDDcd001201.65E-141757No hitNo description
PRINTSPR004048.3E-152540IPR002100Transcription factor, MADS-box
PRINTSPR004048.3E-154061IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MGSGKKKIEI KKIEKESRRM VTFSKRRKGL FKKADELCSK TGAKIAIVVI SASGKPYPYG  60
DIEAIDATLN ISGGGGGNIK AYGENTNYGT HSRSNNMSLK KWLNEINVEQ CHDIEKLLIL  120
KKELEEAKET ILRAQVESW