PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_16767_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family ERF
Protein Properties Length: 227aa    MW: 25225.4 Da    PI: 8.7159
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_16767_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.46.3e-17140190255
                                   AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                                           +y+GVr+++ +g+++AeIrdp     k  r++lg+f+ a +Aa+a++ a+ k++g
  cra_locus_16767_iso_1_len_1411_ver_3 140 QYRGVRRRP-WGKYAAEIRDP---ArKGCRVWLGTFDNAVDAARAYDCAAFKMRG 190
                                           69*******.**********8...4445*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.1E-31139199IPR001471AP2/ERF domain
PfamPF008473.9E-11140190IPR001471AP2/ERF domain
SMARTSM003801.5E-35140204IPR001471AP2/ERF domain
CDDcd000181.56E-28140198No hitNo description
SuperFamilySSF541711.18E-22140199IPR016177DNA-binding domain
PROSITE profilePS5103224.105140198IPR001471AP2/ERF domain
PRINTSPR003673.8E-13141152IPR001471AP2/ERF domain
PRINTSPR003673.8E-13180200IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MALELIRQHL LGDFTSVDTE SFINNLNFCL NDFCDDVYER QMQVVMRAAK LEPTTSISDS  60
ESSSPGSDPK EPETPVSQYL KLENEFFEYE TKPNVVLKPI LSSGSQNSVN STITTAVTVT  120
TADPIGIEIG LSAGRRGSRQ YRGVRRRPWG KYAAEIRDPA RKGCRVWLGT FDNAVDAARA  180
YDCAAFKMRG RKAILNFPLE AGKSSPPATA CRKSRRQSRF ENAFPGN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-27138199364ATERF1
3gcc_A4e-27138199364ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027104025.19e-76LOW QUALITY PROTEIN: ethylene-responsive transcription factor ERF106
TrEMBLQ84XB09e-63Q84XB0_SOLLC; Ethylene response factor 4
STRINGSolyc05g052030.1.11e-63(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165