PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_16828_iso_8
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family AP2
Protein Properties Length: 252aa    MW: 28337.6 Da    PI: 6.9466
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_16828_iso_8genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2249.4e-0876110140
                                   AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtae 40 
                                           s+y+GV+ +k  grW+A+   +     +k+++lg f++ e
  cra_locus_16828_iso_8_len_1902_ver_3  76 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDS-E 110
                                           89********.7******5553..2.26*********9.6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510329.993141IPR001471AP2/ERF domain
SMARTSM003803.4E-5547IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-8943IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.3E-10941IPR001471AP2/ERF domain
CDDcd000184.53E-1676173No hitNo description
SuperFamilySSF541714.58E-776111IPR016177DNA-binding domain
SMARTSM003803.2E-877177IPR001471AP2/ERF domain
PRINTSPR003671.7E-67889IPR001471AP2/ERF domain
PRINTSPR003671.7E-6153173IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MCLIAFVWVS LGGFDTAHAA ARAYDRAAIK FRGVDADINF NISDYEDDMK QMQNLTKEEF  60
VHILRRQSTG FSRGSSKYRG VTLHKCGRWE ARMGQFLGKK YIYLGLFDSE KRLQGPNDHE  120
LLLLILNLLP CILNLNRVPT NSSLPFDFLQ PXAYDKAAIK CNGREAVTNF EPSTYDTEVI  180
YDSQNEGNQH DLDLNLGISN SSAKDNGSSR GVQYHPYDMQ SGRTSKIDNS SAALNNPPLK  240
GLPLVSEHPH VW
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027087005.12e-99ethylene-responsive transcription factor RAP2-7-like isoform X1
RefseqXP_027182766.12e-99ethylene-responsive transcription factor RAP2-7 isoform X1
SwissprotB8AXC36e-75AP21_ORYSI; APETALA2-like protein 1
TrEMBLA0A068UKW46e-97A0A068UKW4_COFCA; Uncharacterized protein
STRINGXP_009782007.15e-93(Nicotiana sylvestris)