PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_16875_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family HB-other
Protein Properties Length: 508aa    MW: 58094.4 Da    PI: 6.9734
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_16875_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.23.9e-202479257
                                          T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
                              Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                                           kR+  t+ qle+Le+ ++++ yps+++r+eL++klgLt+rq ++WF+ rR k+kk
  cra_locus_16875_iso_1_len_1836_ver_3 24 PKRQMKTPFQLEVLEKTYANETYPSEATRAELSEKLGLTDRQLQMWFCHRRLKDKK 79
                                          69****************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.9E-20580IPR009057Homeodomain-like
SuperFamilySSF466892.99E-181080IPR009057Homeodomain-like
PROSITE profilePS5007116.9572080IPR001356Homeobox domain
SMARTSM003891.9E-192284IPR001356Homeobox domain
PfamPF000461.0E-172479IPR001356Homeobox domain
CDDcd000862.21E-142581No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MEAASEGESN KNMNHSPSGG PKKPKRQMKT PFQLEVLEKT YANETYPSEA TRAELSEKLG  60
LTDRQLQMWF CHRRLKDKKE HAGMVAMKPR VNNSVGKKAS VDSLRDEMVI AEPGSENGSG  120
SDSGSGSGSE SGQFDNGEDM PTVPARYFES PKTIMERRII ACVEAQLGEP LREDGPILGV  180
EFDELPPGAF GTPIDSPEHQ DQYRHSYDKK LYGPFDAKKN KAATRGLHES GELKIRSESY  240
GQVGPAYLYE SSVVGSTGKT LPLAQGNGHL STEYSGEGQV SSANLLSHQG RMGLLSSPLN  300
EDAFTSNNED VIQMERKRKI DEARIEREVQ ANEKRIRKEL EKQDILRRKR EEQMKKEMER  360
QDRERRKEEQ RMMREQQRKE ERFQREERRE MERREKFMQK ELLRAERKRQ KEELRMEREA  420
AKQKAAMERA AARRIAKESL ELIEDERLEL MELAASSKGL PSIVSLDYDT LQSLEMFRDS  480
LCEFPPKSVK MKKPFAVQPW IDSENNAG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17279RRLKDKKE
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269|PubMed:22694359, ECO:0000269|PubMed:23872538}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027159398.10.0homeobox-DDT domain protein RLT1 isoform X1
SwissprotQ9FFH11e-122RLT2_ARATH; Homeobox-DDT domain protein RLT2
TrEMBLA0A068TTV70.0A0A068TTV7_COFCA; Uncharacterized protein
STRINGMigut.M01107.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21422352