PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_16930_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

Trihelix

Protein Properties

Length: 222aa MW: 25113.2 Da PI: 5.0253

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_16930_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	31.2	5.6e-10	129	182	2	64
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykki 64 W+++evlaL+++r+ + We+vs+k++e gf+rs++ Ckek+e+ ++ + cra_locus_16930_iso_2_len_664_ver_3 129 WSNDEVLALLRIRSW----FP-----DFTWEHVSRKLAEVGFQRSAENCKEKFEEQSRHFGDN 182 999999999999874....44.....358*************************999888655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	5.3E-7	128	190	No hit	No description
PROSITE profile	PS50090	6.214	129	176	IPR017877	Myb-like domain

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence Send to blast
XFTPTEFHTH KKRGEKVMFD GGVPADQFHQ FIASRSSIPL PLSFPHNHHG VTIVSSSPPP 60 PPITTTTFAG GCFESYPEGF FPPPPPPPHC HHHNPVAATA VNKVEEVVMV KEEGSRSVVS 120 VSDGSVEEWS NDEVLALLRI RSWFPDFTWE HVSRKLAEVG FQRSAENCKE KFEEQSRHFG 180 DNMSYNKSNY RFLSDLDEIY HGENPEKTQD LAQGNEEEEE EX

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2R6RBE9	1e-38	A0A2R6RBE9_ACTCH; Trihelix transcription factor

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13700	10	13